Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20335
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    28   0.93 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   3.8  

>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = -2

Query: 362 SRPWTAANTKCYRA-PEMRVRRDLQKLRLQSKNLKIITKMPKN*KHNFIGQRRRFHCSTS 186
           SRP TA     Y + P M   +D ++LRL+S +  ++ +   N        RR    S+S
Sbjct: 221 SRPGTAITLPPYESDPHMLNEKDFERLRLESSSSPMMRRSSLN------SNRRSVESSSS 274

Query: 185 IVFEKNCVRDLTSTTSVNQQSAV----GSSLQSYYFKQIKM 75
             F +     L S  ++   ++      S L+S Y ++++M
Sbjct: 275 AAFVEGQSFILDSNGAIEVANSAFALDDSDLESAYNEELEM 315


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 79  LICLK*YDCRDEPTADCWFTEVVE 150
           L C+  YD  D  T D W T + E
Sbjct: 489 LCCILEYDTNDSDTLDAWLTRLFE 512


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 176 EKNCVRDLTSTTSVNQQSAVGSSLQSYYFKQIKMSL*NRIECKRQSVDRAAHCGPH 9
           +KN +R   S  S+   + VG++ +++ F Q+K    + +E   Q+V      G H
Sbjct: 180 DKN-IRQEASNLSITLYAWVGNAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGH 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,449
Number of Sequences: 5004
Number of extensions: 39778
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)