Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20335
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0171 - 7427862-7428293                                           29   2.2  
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470...    28   5.1  

>02_02_0171 - 7427862-7428293
          Length = 143

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 549 PKLTSFLPFFLIYINSYNKHNSFVLPTHAHP 457
           P +T+   F LI +NS +  +S +L +H+HP
Sbjct: 65  PSVTNQRQFHLIVVNSSSISSSLILHSHSHP 95


>09_02_0133 +
           4707944-4708308,4708320-4708534,4708626-4708672,
           4708997-4709393,4710042-4710608,4710708-4710838,
           4711274-4711747
          Length = 731

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 70  YKIELNANVSPSTGRHTVART 8
           YKIELN NV+P   R+ V  T
Sbjct: 79  YKIELNTNVTPDQRRYNVPTT 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,332
Number of Sequences: 37544
Number of extensions: 248701
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)