Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20335
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20518| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=7.4)            31   0.74 
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              28   6.9  
SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)                   27   9.1  

>SB_20518| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=7.4)
          Length = 494

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 492 HNSFVLPTHAHPSLLTMKCCSIGGTSQSRDPRRTQSSVQPLCPVAPVDCS*HEVLSCPRD 313
           +NSF LP   H S   +K  S   +S  +  R  ++   P   +   DC+  E LS P+D
Sbjct: 428 NNSFPLPGDIHGSRCNVKDGSKSSSSHDKCNRSQEADSTPEPHLDVTDCAAKEPLSTPKD 487


>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 241 LGIFVIIFKFLDCNLSFCKSRLTRISGAR*HFVLAAVHGRDRTQRLH 381
           +G    I K L C   +C   L  ++  R   +L+  HG+ R + +H
Sbjct: 494 VGFMTKIVKTLRCVCFYCSKLLVDLNNPRVKEILSKSHGQPRKRMMH 540


>SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 462 HPSLLTMKCCSIGGTSQ-SRDPRRTQSSVQPLCPVAPVD 349
           HPSLL   C S G  ++ +    +  SS+QP    +P++
Sbjct: 207 HPSLLVAPCSSTGSVNELTYSTTQMNSSLQPQSSTSPLN 245


>SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)
          Length = 498

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 71  DSF*SV*NSMIVGMSQLRIVGSPRSSKLNHVRNFFRKQY 187
           D+F S+  S ++ + Q+ +VGS  + K + + NF  K +
Sbjct: 18  DAFASIGYSSMIDLPQIAVVGSQSAGKSSVLENFVGKDF 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,048
Number of Sequences: 59808
Number of extensions: 308596
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)