Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20335
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20180.1 68414.m02522 hypothetical protein similar to At14a (...    28   4.3  
At4g11390.1 68417.m01837 DC1 domain-containing protein contains ...    28   5.7  
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    27   7.5  
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ...    27   7.5  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    27   7.5  

>At1g20180.1 68414.m02522 hypothetical protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 391

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 227 NFIGQR-RRFHCSTSIVFEKNCVRDLTSTTSVNQQSAVGSSLQSY 96
           NF+G R + F    +   +K C R LTS  SVN++        SY
Sbjct: 6   NFLGSRLKSFPTRKAGKSDKECCRSLTSKLSVNEEYKEAFRTNSY 50


>At4g11390.1 68417.m01837 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 514

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 416 ARVVILDALRVVCSLCVLSRPWTAANTKCYRAPE 315
           AR  +L  +  VC +C     WT     C R P+
Sbjct: 75  ARTSVLGVVNSVCGVCHQKVDWTWGGYSCQRCPQ 108


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
           Pfam profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 241 LGIFVIIFKFLDCNLSFCKSRLTRI 315
           + IF+ +FKFLD  LS    ++TRI
Sbjct: 123 INIFLSVFKFLDGELSSYSFKITRI 147


>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 525

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 440 SVARSAGR-ARVVILDALRVVCSLCVLSRPWTAANTKCYRAPE 315
           ++ R A R +R  +L  +  VC +C     WT     C R P+
Sbjct: 203 NINRHAHRVSRTSVLGVVNSVCGVCHQKVDWTWGGYSCQRCPQ 245


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 413 RVVILDALRVVCSLCVLSRPWTAANTKCYRAPE 315
           R  +L  +  VC +C     WT     C R P+
Sbjct: 232 RTSVLGVVNSVCGVCRQKVDWTCGGFSCQRCPD 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,108
Number of Sequences: 28952
Number of extensions: 203652
Number of successful extensions: 461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)