Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20334
         (463 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UC93 Cluster: Class C acid phosphatase; n=6; Helicoba...    33   3.0  
UniRef50_Q9VPV7 Cluster: CG4415-PA; n=3; Sophophora|Rep: CG4415-...    33   4.0  
UniRef50_Q5CJN0 Cluster: Serine/threonine protein kinase KKIALRE...    32   5.3  

>UniRef50_Q6UC93 Cluster: Class C acid phosphatase; n=6;
           Helicobacter|Rep: Class C acid phosphatase -
           Helicobacter pylori (Campylobacter pylori)
          Length = 245

 Score = 33.1 bits (72), Expect = 3.0
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 188 SIVFEKNCVRDLTSTTSVNQQSAVGSSLQSYYFKQIKMSL*NRIE 54
           S++  K CV  LT +   +QQSA   +LQ   +K  KM+L N ++
Sbjct: 17  SVLNAKECVSPLTRSVKYHQQSAEIRALQLQSYKMAKMALDNNLK 61


>UniRef50_Q9VPV7 Cluster: CG4415-PA; n=3; Sophophora|Rep: CG4415-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 347

 Score = 32.7 bits (71), Expect = 4.0
 Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = -3

Query: 317 EMRVRRDLQKLRLQS-KNLKIITKMPKN*KHNFIGQR---RRFHCSTSIVFEKNCVRDLT 150
           E + RR L KL L+  +N+  +T         +I Q    R  H ST I F + CV D T
Sbjct: 192 ERKARRILMKLDLKPMENVARVTMKKGKNILLYIDQPDVYRVAHSSTYIFFGEICVED-T 250

Query: 149 STTSVNQQSAV 117
           STTSV  Q+AV
Sbjct: 251 STTSVASQAAV 261


>UniRef50_Q5CJN0 Cluster: Serine/threonine protein kinase KKIALRE;
           n=2; Cryptosporidium|Rep: Serine/threonine protein
           kinase KKIALRE - Cryptosporidium hominis
          Length = 511

 Score = 32.3 bits (70), Expect = 5.3
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -3

Query: 383 VCSLCVLSRPWTA-ANTKCYRAPEMRVR 303
           V SLCV SRP T+  +T+ YRAPE+ V+
Sbjct: 202 VDSLCVASRPLTSYVSTRWYRAPELLVK 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,565,906
Number of Sequences: 1657284
Number of extensions: 6898140
Number of successful extensions: 15787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15785
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)