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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20334
         (463 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   1.4  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           21   7.4  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    20   9.7  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 337 VLAAVHGRDRTQRLHTTLSASRITTLARPADR 432
           V+A V  R RTQ L+   ++ R +    P+D+
Sbjct: 99  VMANVRERQRTQSLNEAFASLRKSIPTMPSDK 130


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
           Y C  EP  D  FT  ++++ RT ++   ++V
Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
           Y C  EP  D  FT  ++++ RT ++   ++V
Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
           Y C  EP  D  FT  ++++ RT ++   ++V
Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
           Y C  EP  D  FT  ++++ RT ++   ++V
Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
           Y C  EP  D  FT  ++++ RT ++   ++V
Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 343 AAVHGRDRTQRLHTTLSASRITTLARPADR 432
           A V  R RTQ L+   ++ R +    P+D+
Sbjct: 1   ANVRERQRTQSLNEAFASLRKSIPTMPSDK 30


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 332 CYRAPEMRVRRDLQKLRLQSKNLKIITKMPK 240
           C R+   +V ++ QKLR +     ++   PK
Sbjct: 259 CVRSEASKVVKNAQKLRHKFDLKTLVLNFPK 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,867
Number of Sequences: 336
Number of extensions: 1646
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)

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