BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20334 (463 letters) Database: tribolium 336 sequences; 122,585 total letters Searching.......................................................done Score E Sequences producing significant alignments: (bits) Value AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH trans... 23 1.4 EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.8 EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.8 EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.8 EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.8 EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.8 S73230-1|AAB30812.1| 35|Tribolium castaneum twist protein. 21 7.4 AM292355-1|CAL23167.1| 324|Tribolium castaneum gustatory recept... 20 9.7 >AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH transcription factor protein. Length = 193 Score = 23.0 bits (47), Expect = 1.4 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +1 Query: 337 VLAAVHGRDRTQRLHTTLSASRITTLARPADR 432 V+A V R RTQ L+ ++ R + P+D+ Sbjct: 99 VMANVRERQRTQSLNEAFASLRKSIPTMPSDK 130 >EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 311 Score = 22.6 bits (46), Expect = 1.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +1 Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192 Y C EP D FT ++++ RT ++ ++V Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220 >EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 311 Score = 22.6 bits (46), Expect = 1.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +1 Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192 Y C EP D FT ++++ RT ++ ++V Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220 >EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 311 Score = 22.6 bits (46), Expect = 1.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +1 Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192 Y C EP D FT ++++ RT ++ ++V Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220 >EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 311 Score = 22.6 bits (46), Expect = 1.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +1 Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192 Y C EP D FT ++++ RT ++ ++V Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220 >EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 311 Score = 22.6 bits (46), Expect = 1.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +1 Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192 Y C EP D FT ++++ RT ++ ++V Sbjct: 191 YACCPEPYVDVTFT--IKIRRRTLYYFFNLIV 220 >S73230-1|AAB30812.1| 35|Tribolium castaneum twist protein. Length = 35 Score = 20.6 bits (41), Expect = 7.4 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = +1 Query: 343 AAVHGRDRTQRLHTTLSASRITTLARPADR 432 A V R RTQ L+ ++ R + P+D+ Sbjct: 1 ANVRERQRTQSLNEAFASLRKSIPTMPSDK 30 >AM292355-1|CAL23167.1| 324|Tribolium castaneum gustatory receptor candidate 34 protein. Length = 324 Score = 20.2 bits (40), Expect = 9.7 Identities = 9/31 (29%), Positives = 16/31 (51%) Frame = -3 Query: 332 CYRAPEMRVRRDLQKLRLQSKNLKIITKMPK 240 C R+ +V ++ QKLR + ++ PK Sbjct: 259 CVRSEASKVVKNAQKLRHKFDLKTLVLNFPK 289 Database: tribolium Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 122,585 Number of sequences in database: 336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 98,867 Number of Sequences: 336 Number of extensions: 1646 Number of successful extensions: 8 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8 length of database: 122,585 effective HSP length: 52 effective length of database: 105,113 effective search space used: 10616413 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
- SilkBase 1999-2023 -