Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20334
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470...    28   3.2  
06_03_1215 - 28474019-28474079,28475658-28476739                       27   7.3  
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    27   9.7  

>09_02_0133 +
           4707944-4708308,4708320-4708534,4708626-4708672,
           4708997-4709393,4710042-4710608,4710708-4710838,
           4711274-4711747
          Length = 731

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 70  YKIELNANVSPSTGRHTVART 8
           YKIELN NV+P   R+ V  T
Sbjct: 79  YKIELNTNVTPDQRRYNVPTT 99


>06_03_1215 - 28474019-28474079,28475658-28476739
          Length = 380

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 330 TLRVSCSPRARQDTEAAHYSECVE 401
           TLRVSC    + D  A+H   CVE
Sbjct: 248 TLRVSCHDGGKPDPPASHEMLCVE 271


>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
            725738-725840,726106-726264,726728-726846,726891-727004,
            727119-727277,727404-727451,728464-728640,729064-729116,
            729549-729661,729793-729873,729966-730081,730786-730905,
            732321-732429,732593-732770,732852-732920,733102-733233,
            733657-733766,733843-734003,734081-734171,734258-734355,
            734499-734619,734732-734892,734985-735090,735142-735236,
            735828-735852,736008-736084,736196-736282,736372-736421,
            736558-736639,736735-736795,737064-737116,737206-737395,
            737472-737595,737860-737962,738064-738156,740344-740422,
            740508-740584,740915-741043,742614-742731,742816-742913,
            743457-743546,744998-745123,745238-745351,745488-745611,
            745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +1

Query: 241  LGIFVIIFKFLDCNLSFCKSRLTRISGAR*H-FVLAAVHG 357
            LG+   IF F+   L FC    T   G R H F    +HG
Sbjct: 1561 LGLLKAIFSFITMQLQFCSVFFTFSLGTRTHYFGRTILHG 1600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,479,775
Number of Sequences: 37544
Number of extensions: 192061
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)