Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20334
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              28   4.3  
SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)                   27   5.7  
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_48125| Best HMM Match : RVT_1 (HMM E-Value=8.4e-38)                 27   7.6  
SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)                 27   7.6  
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_546| Best HMM Match : DUF683 (HMM E-Value=8.3)                      27   7.6  
SB_13033| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 241 LGIFVIIFKFLDCNLSFCKSRLTRISGAR*HFVLAAVHGRDRTQRLH 381
           +G    I K L C   +C   L  ++  R   +L+  HG+ R + +H
Sbjct: 494 VGFMTKIVKTLRCVCFYCSKLLVDLNNPRVKEILSKSHGQPRKRMMH 540


>SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)
          Length = 498

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 71  DSF*SV*NSMIVGMSQLRIVGSPRSSKLNHVRNFFRKQY 187
           D+F S+  S ++ + Q+ +VGS  + K + + NF  K +
Sbjct: 18  DAFASIGYSSMIDLPQIAVVGSQSAGKSSVLENFVGKDF 56


>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 30   PVDGLTFAFNSIL*THFDLFEIV 98
            P++ L +AFN+I+  HFD  ++V
Sbjct: 1170 PLETLRYAFNAIVQPHFDYCDVV 1192


>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 133 TNNPQLAHPYNHTISNRSK*VYKIELNANVSPSTG-RHTVAR 11
           T  P   HP+ HTI    K      L  +VSP++  RHT ++
Sbjct: 221 TPKPASIHPHPHTIPGEYKMKMDACLGISVSPNSSIRHTASQ 262


>SB_48125| Best HMM Match : RVT_1 (HMM E-Value=8.4e-38)
          Length = 453

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 30  PVDGLTFAFNSIL*THFDLFEIV 98
           P++ L +AFN+I+  HFD  ++V
Sbjct: 355 PLETLRYAFNAIVQPHFDYCDVV 377


>SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)
          Length = 871

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 30  PVDGLTFAFNSIL*THFDLFEIV 98
           P++ L +AFN+I+  HFD  ++V
Sbjct: 714 PLETLRYAFNAIVQPHFDYCDVV 736


>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 30  PVDGLTFAFNSIL*THFDLFEIV 98
           P++ L +AFN+I+  HFD  ++V
Sbjct: 396 PLETLRYAFNAIVQPHFDYCDVV 418


>SB_546| Best HMM Match : DUF683 (HMM E-Value=8.3)
          Length = 160

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 30  PVDGLTFAFNSIL*THFDLFEIV 98
           P++ L +AFN+I+  HFD  ++V
Sbjct: 63  PLETLRYAFNAIVQPHFDYCDVV 85


>SB_13033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 30 PVDGLTFAFNSIL*THFDLFEIV 98
          P++ L +AFN+I+  HFD  ++V
Sbjct: 24 PLETLRYAFNAIVQPHFDYDDVV 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,467,757
Number of Sequences: 59808
Number of extensions: 237082
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)