Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20334
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   6.5  
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical
           protein F42C5.2 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 374 LCVLSRPWTAANTKCYRAPEMRVRRDLQK 288
           LC    P TA N KC    ++R++ +L+K
Sbjct: 20  LCKFDEPVTANNVKCVTIVDLRLKLELEK 48


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 218 GQRRRFHCSTSI-VFEKNCVRDLTSTTSVNQQSAVGSSLQS 99
           GQ   + C  SI +  K C R+ TSTT+V   +   +++++
Sbjct: 183 GQTNAYSCDESIQIICKYCPRETTSTTTVTPTTTKAATIKT 223


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 188 SIVFEKNCVRDLTSTTSVNQQSAVGSSLQS 99
           S +F  N V D TST+ V   ++ GSS +S
Sbjct: 860 SHIFTLNVVADSTSTSEVTSTTSTGSSSES 889


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 188 SIVFEKNCVRDLTSTTSVNQQSAVGSSLQS 99
           S +F  N V D TST+ V   ++ GSS +S
Sbjct: 860 SHIFTLNVVADSTSTSEVTSTTSTGSSSES 889


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 308 VRRDLQKLRLQSKNLKIITKMP 243
           + RDL K+R  SK +KI +K+P
Sbjct: 435 IDRDLAKIRKSSKVMKIASKLP 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,918,962
Number of Sequences: 27780
Number of extensions: 175098
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)