Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20334
(463 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 26 0.23
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 0.40
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.92
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.92
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.92
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.92
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.92
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.92
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 0.92
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 0.92
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 3.7
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 25.8 bits (54), Expect = 0.23
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 274 DCNLSFCKSRLTRISGA-----R*HFVLAAVHGRDRTQRLHTTLSASRITTLARPADR 432
+ N S K+++ R SGA + V+A V R RTQ L+ +A R P+D+
Sbjct: 230 ESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDK 287
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.0 bits (52), Expect = 0.40
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 91 K*YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
K Y C DEP D +F + ++ +T F++ ++V
Sbjct: 213 KYYPCCDEPYPDIFFN--ITLRRKTLFYTVNLIV 244
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y C EP D FT ++++ RT ++ ++V
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYYFFNLIV 203
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y C EP D FT ++++ RT ++ ++V
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYYFFNLIV 203
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y C EP D FT ++++ RT ++ ++V
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYYFFNLIV 203
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y C EP D FT ++++ RT ++ ++V
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYYFFNLIV 203
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y C EP D FT ++++ RT ++ ++V
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYYFFNLIV 203
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y C EP D FT ++++ RT ++ ++V
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYYFFNLIV 203
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y C EP D FT ++++ RT ++ ++V
Sbjct: 242 YQCCPEPYVDVTFT--IQIRRRTLYYFFNLIV 271
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y C EP D FT ++++ RT ++ ++V
Sbjct: 242 YQCCPEPYVDVTFT--IQIRRRTLYYFFNLIV 271
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 3.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 97 YDCRDEPTADCWFTEVVEVKSRTQFFSKTILV 192
Y+C EP D F VV ++ RT ++ ++V
Sbjct: 211 YNCCPEPYIDITF--VVIIRRRTLYYFFNLIV 240
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,046
Number of Sequences: 438
Number of extensions: 1916
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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