Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20327
(759 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY819656-1|AAV70656.1| 56|Tribolium castaneum elongation facto... 69 4e-14
AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1 ... 25 0.87
AM292334-1|CAL23146.2| 390|Tribolium castaneum gustatory recept... 24 1.5
AM292333-1|CAL23145.2| 316|Tribolium castaneum gustatory recept... 24 1.5
S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Triboliu... 22 4.6
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 22 6.1
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 22 6.1
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 21 8.1
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 21 8.1
>AY819656-1|AAV70656.1| 56|Tribolium castaneum elongation factor
1-alpha protein.
Length = 56
Score = 68.9 bits (161), Expect = 4e-14
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +1
Query: 619 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 717
LQDVYKIGGIGTVPVGRVETGVLKPG +VVFAP
Sbjct: 1 LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAP 33
Score = 33.9 bits (74), Expect = 0.001
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2
Query: 713 PRNITTEVKSVEMHH 757
P NITTEVKSVEMHH
Sbjct: 33 PANITTEVKSVEMHH 47
>AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1
protein protein.
Length = 371
Score = 24.6 bits (51), Expect = 0.87
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 687 QHTSFN-SADGHGTNTTDFVYVLQ 619
++ SFN +A+GHG NT+ Y Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303
>AM292334-1|CAL23146.2| 390|Tribolium castaneum gustatory receptor
candidate 13 protein.
Length = 390
Score = 23.8 bits (49), Expect = 1.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 570 IESFNEAFSVSFAFFTLH 517
I++FN+ F SF FTL+
Sbjct: 271 IDAFNDIFGWSFLLFTLY 288
Score = 22.6 bits (46), Expect = 3.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 51 LDKLKAERERGITIDIALWKFETSKYYVTII 143
L KLK + G + +A KF K+YV I+
Sbjct: 78 LKKLKFLLKLGQLLGLAPVKFYVQKFYVVIL 108
>AM292333-1|CAL23145.2| 316|Tribolium castaneum gustatory receptor
candidate 12 protein.
Length = 316
Score = 23.8 bits (49), Expect = 1.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 570 IESFNEAFSVSFAFFTLH 517
I++FN+ F SF FTL+
Sbjct: 197 IDAFNDIFGWSFLLFTLY 214
Score = 22.6 bits (46), Expect = 3.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 51 LDKLKAERERGITIDIALWKFETSKYYVTII 143
L KLK + G + +A KF K+YV I+
Sbjct: 4 LKKLKFLLKLGQLLGLAPVKFYVQKFYVVIL 34
>S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Tribolium
castaneum homeodomainprotein mRNA, complete cds. ).
Length = 327
Score = 22.2 bits (45), Expect = 4.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 500 WFKDGRWSVKKAKLTEN-ASLKLSMPSC--HLPAPLT 601
WF++ R +KKA T+N +L+L H PLT
Sbjct: 275 WFQNKRAKIKKASGTKNPLALQLMAQGLYNHSTIPLT 311
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 6.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 442 ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 314
+S ++ + N L V FLL K L + W G+ +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 21.8 bits (44), Expect = 6.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 442 ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 314
+S ++ + N L V FLL K L + W G+ +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/28 (28%), Positives = 13/28 (46%)
Frame = -2
Query: 473 CCLRAIQKWARKRQQLGCSQSS*CMRIL 390
CC A+ RQ + S+ C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/28 (28%), Positives = 13/28 (46%)
Frame = -2
Query: 473 CCLRAIQKWARKRQQLGCSQSS*CMRIL 390
CC A+ RQ + S+ C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,839
Number of Sequences: 336
Number of extensions: 4757
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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