Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20327
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 161 7e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 161 1e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 161 1e-40
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 95 1e-20
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 87 2e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 68 2e-12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 48 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.011
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.077
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.18
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.31
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.41
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.54
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.7
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.7
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.2
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.9
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa... 25 8.9
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 8.9
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 8.9
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 8.9
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 161 bits (392), Expect = 7e-41
Identities = 74/82 (90%), Positives = 77/82 (93%)
Frame = +3
Query: 9 AQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 188
A E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITG
Sbjct: 46 ATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITG 105
Query: 189 TSQADCAVLIVAAGTGEFEAGI 254
TSQADCAVLI+ GTGEFEAGI
Sbjct: 106 TSQADCAVLIIGGGTGEFEAGI 127
Score = 152 bits (368), Expect = 6e-38
Identities = 83/170 (48%), Positives = 110/170 (64%), Gaps = 3/170 (1%)
Frame = +2
Query: 257 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAV 436
K+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTV 186
Query: 437 AFVPISGWHGDNMLEPSTKMPWFKDGRWSVKKAKLTENASLKLSMPSCHLPA-PLTSPCV 613
FVP+SG+ GDNM+EP+T MPW++ G KA + + +L ++ S PA P P
Sbjct: 187 PFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLR 245
Query: 614 FPCKTYTK--SVVLVPCPSAELKLVC*NQVPLLSLPRNITTEVKSVEMHH 757
P + K + VP E ++ + + P +TTEVKSVEMHH
Sbjct: 246 LPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA-PAGVTTEVKSVEMHH 294
Score = 124 bits (300), Expect = 1e-29
Identities = 57/71 (80%), Positives = 61/71 (85%)
Frame = +1
Query: 505 QGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV 684
QGWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV
Sbjct: 210 QGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV 269
Query: 685 LKPGTIVVFAP 717
+KPG IV FAP
Sbjct: 270 IKPGMIVTFAP 280
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 161 bits (391), Expect = 1e-40
Identities = 73/82 (89%), Positives = 77/82 (93%)
Frame = +3
Query: 9 AQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 188
A E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITG
Sbjct: 46 ATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITG 105
Query: 189 TSQADCAVLIVAAGTGEFEAGI 254
TSQADCA+LI+ GTGEFEAGI
Sbjct: 106 TSQADCAILIIGGGTGEFEAGI 127
Score = 152 bits (368), Expect = 6e-38
Identities = 83/170 (48%), Positives = 110/170 (64%), Gaps = 3/170 (1%)
Frame = +2
Query: 257 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAV 436
K+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTV 186
Query: 437 AFVPISGWHGDNMLEPSTKMPWFKDGRWSVKKAKLTENASLKLSMPSCHLPA-PLTSPCV 613
FVP+SG+ GDNM+EP+T MPW++ G KA + + +L ++ S PA P P
Sbjct: 187 PFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLR 245
Query: 614 FPCKTYTK--SVVLVPCPSAELKLVC*NQVPLLSLPRNITTEVKSVEMHH 757
P + K + VP E ++ + + P +TTEVKSVEMHH
Sbjct: 246 LPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA-PAGVTTEVKSVEMHH 294
Score = 124 bits (300), Expect = 1e-29
Identities = 57/71 (80%), Positives = 61/71 (85%)
Frame = +1
Query: 505 QGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV 684
QGWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV
Sbjct: 210 QGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV 269
Query: 685 LKPGTIVVFAP 717
+KPG IV FAP
Sbjct: 270 IKPGMIVTFAP 280
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 161 bits (391), Expect = 1e-40
Identities = 73/82 (89%), Positives = 77/82 (93%)
Frame = +3
Query: 9 AQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 188
A E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITG
Sbjct: 46 ATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITG 105
Query: 189 TSQADCAVLIVAAGTGEFEAGI 254
TSQADCA+LI+ GTGEFEAGI
Sbjct: 106 TSQADCAILIIGGGTGEFEAGI 127
Score = 152 bits (368), Expect = 6e-38
Identities = 83/170 (48%), Positives = 110/170 (64%), Gaps = 3/170 (1%)
Frame = +2
Query: 257 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAV 436
K+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTV 186
Query: 437 AFVPISGWHGDNMLEPSTKMPWFKDGRWSVKKAKLTENASLKLSMPSCHLPA-PLTSPCV 613
FVP+SG+ GDNM+EP+T MPW++ G KA + + +L ++ S PA P P
Sbjct: 187 PFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLR 245
Query: 614 FPCKTYTK--SVVLVPCPSAELKLVC*NQVPLLSLPRNITTEVKSVEMHH 757
P + K + VP E ++ + + P +TTEVKSVEMHH
Sbjct: 246 LPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA-PAGVTTEVKSVEMHH 294
Score = 124 bits (300), Expect = 1e-29
Identities = 57/71 (80%), Positives = 61/71 (85%)
Frame = +1
Query: 505 QGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV 684
QGWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV
Sbjct: 210 QGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV 269
Query: 685 LKPGTIVVFAP 717
+KPG IV FAP
Sbjct: 270 IKPGMIVTFAP 280
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 94.7 bits (225), Expect = 1e-20
Identities = 45/83 (54%), Positives = 53/83 (63%)
Frame = +3
Query: 9 AQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 188
A GKGSF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G
Sbjct: 216 AANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAG 275
Query: 189 TSQADCAVLIVAAGTGEFEAGIL 257
S AD AVL+V + FE G L
Sbjct: 276 ASSADFAVLVVDSSQNNFERGFL 298
Score = 72.9 bits (171), Expect = 4e-14
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAA 433
+NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+ +
Sbjct: 299 ENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSN 356
Query: 434 VAFVPISGWHGDNML--EPSTKMPWFK 508
V FVPIS G N++ + S W+K
Sbjct: 357 VHFVPISAISGTNLIQKDSSDLYKWYK 383
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 544 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 681
G L+ ALD ++PP +P KPLRL + DVY+ TV GRVE G
Sbjct: 384 GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAG 428
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 87.4 bits (207), Expect = 2e-18
Identities = 39/84 (46%), Positives = 55/84 (65%)
Frame = +3
Query: 9 AQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 188
A+E GK S+ +W LD ERE+G T+++ FET +++DAPGH+ ++ NMI G
Sbjct: 277 AKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMING 336
Query: 189 TSQADCAVLIVAAGTGEFEAGILR 260
SQAD VL+++A GEFEAG R
Sbjct: 337 ASQADIGVLVISARRGEFEAGFER 360
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Frame = +2
Query: 251 YPKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GYNP 427
+ + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GYN
Sbjct: 358 FERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNS 417
Query: 428 AA-VAFVPISGWHGDNMLE--PSTKMPWFK 508
V ++P+S + G N+ + S+ PW++
Sbjct: 418 KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ 447
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 67.7 bits (158), Expect = 2e-12
Identities = 31/75 (41%), Positives = 48/75 (64%)
Frame = +3
Query: 15 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 194
++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 195 QADCAVLIVAAGTGE 239
D A+++V+A G+
Sbjct: 139 TMDGAIIVVSATDGQ 153
Score = 49.2 bits (112), Expect = 6e-07
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +1
Query: 553 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 696
L+EA+D+ + P R TD P + ++DV+ I G GTV GRVE G LK G
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKG 282
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 266 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 403
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 48 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 227
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 228 GTG 236
G
Sbjct: 127 SAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 51 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 218
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 219 VAAGTG 236
V A G
Sbjct: 155 VDASQG 160
Score = 29.1 bits (62), Expect = 0.72
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 517 VERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 696
V K GK + L E + I PP + PLR L D + G + + R+ G +K G
Sbjct: 214 VSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRIMEGFIKKG 273
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 21 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 194
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 195 QADCAVLIVAAGTG 236
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.077
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Frame = +3
Query: 51 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 173
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 174 NMITGTSQADCAVLIVAAGTG 236
+ D AVL++ A +G
Sbjct: 161 EVERALRVLDGAVLVLCAVSG 181
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 129 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 224
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 126 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 236
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 54 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 176
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 138 IIDAPGHRDFIKNMITGTSQADCAVLIV 221
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 126 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 221
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 126 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 221
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 69 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 221
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 357 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 446
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPACUNK4.17 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 436 RFRAHFWMARRQHVGAFNQNALVQGWQVER-KEGKADG 546
RF A W + VGAF N +QG + + E +ADG
Sbjct: 292 RFTAASWKYKDGGVGAFTHNITLQGAKYDTCIEVQADG 329
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 686 NTPVSTLPTGTVPIPPIL 633
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Frame = -2
Query: 695 PGFNTPVSTLPTGTVPIP-PILYTSCR--GRRRGLSVGRAGGRMASRASMRH--FPSALP 531
P +N P G+VP+P P S R R S GR S H PS LP
Sbjct: 314 PNYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLP 373
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 335 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 505
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,484
Number of Sequences: 5004
Number of extensions: 76905
Number of successful extensions: 279
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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