Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20327
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   4e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           82   4e-16
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              75   5e-14
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     42   5e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.44 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.3  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              30   2.3  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   7.2  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   7.2  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (310), Expect = 4e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +3

Query: 18  MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 197
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score =  108 bits (260), Expect = 4e-24
 Identities = 49/67 (73%), Positives = 56/67 (83%)
 Frame = +1

Query: 523 RKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTI 702
           +KE  A G  L E LD+ILPP+RP+  PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+
Sbjct: 77  KKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTV 136

Query: 703 VVFAPQH 723
           V F+P +
Sbjct: 137 VTFSPSN 143



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
 Frame = +2

Query: 470 NMLEPSTKMPWFKDGRWSVKKA----KLTENAS---LKLSMPSCHLPA-PLTSPCVFPCK 625
           NM+  +++MPWFK  +W++++     K   NAS   L   + S   P+ P   P   P +
Sbjct: 53  NMITGTSQMPWFK--QWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQ 110

Query: 626 TYTK--SVVLVPCPSAELKLVC*NQVPLLSLPRNITTEVKSVEMHH 757
              K   +  VP    E  ++    V   S P NITTEVKSVEMHH
Sbjct: 111 DVYKIGGIGTVPVGRVETGVLKPGTVVTFS-PSNITTEVKSVEMHH 155


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 34/84 (40%), Positives = 56/84 (66%)
 Frame = +3

Query: 9   AQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 188
           A+E  + ++  +W LD  + ER++G T+++    F+T   + T++DAPGH+ F+ NMI+G
Sbjct: 183 AKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISG 242

Query: 189 TSQADCAVLIVAAGTGEFEAGILR 260
            +QAD  VL+++A  GEFE G  R
Sbjct: 243 ATQADLGVLVISARKGEFETGFER 266



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 30/59 (50%), Positives = 45/59 (76%)
 Frame = +2

Query: 251 YPKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 427
           + + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 264 FERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = +3

Query: 90  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 251
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAG 54



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +2

Query: 251 YPKNGQTREHALLAFTLGVKQLIVGVNKMD 340
           +   GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 55  FESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +3

Query: 54  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 233
           D ++ ER+RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 234 G 236
           G
Sbjct: 115 G 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 132 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 236
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 81  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 227
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 57  KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 224
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
 Frame = +3

Query: 54  DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITG 188
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG 122


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 138 IIDAPGHRDFIKNMITGTSQADCAVLIV 221
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 48   VLDKLKAERERGITI 92
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 126 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 236
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 598 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 717
           ++P    + D Y + G+GTV  G    G+++    ++  P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 341  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 481
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 319 DELFDTEGESEQGMLTGLTVLRIPASNSPVPAATMSTAQSA*EVPVIMFLM 167
           D + DT   + +G  TG     IPA  SPVP A   +A  +   P+ + LM
Sbjct: 832 DMMADTPDTTPKGTATG-----IPAPVSPVPNAPADSATDSDSDPIAILLM 877


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,811,170
Number of Sequences: 59808
Number of extensions: 616435
Number of successful extensions: 1894
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)