Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20323
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 3e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 62 7e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 62 9e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 52 6e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 48 1e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 2e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 3e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 41 1e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 2e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 41 2e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 40 3e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 40 3e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 4e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 39 6e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 39 6e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 38 0.001
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 38 0.001
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 36 0.004
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 35 0.012
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.016
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 33 0.038
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.066
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.066
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 1.9
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 96.7 bits (230), Expect = 3e-21
Identities = 43/87 (49%), Positives = 56/87 (64%)
Frame = +1
Query: 256 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYV 435
W + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 436 QQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ VK +G++ PTPIQ Q WP+AM R
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGR 160
Score = 75.8 bits (178), Expect = 5e-15
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQ 673
S TGSGKTL+Y LPAIVHIN QP + DGPI LVLAPTRELA QIQQ
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQ 213
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 62.1 bits (144), Expect = 7e-11
Identities = 25/46 (54%), Positives = 37/46 (80%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQI 667
++TGSGKT+A++LP HI +Q P++ +GPIA+++ PTRELA QI
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 247 TPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANF 423
T ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 366 TVDHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGL 425
Query: 424 PDYVQQGVKTMGYKEPTPIQAQGWP 498
+ ++GY++PT IQAQ P
Sbjct: 426 SAQTISVINSLGYEKPTSIQAQAIP 450
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 61.7 bits (143), Expect = 9e-11
Identities = 30/50 (60%), Positives = 39/50 (78%), Gaps = 3/50 (6%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSD---GPIALVLAPTRELAQQIQ 670
++TGSGKT A+I+P I+ I+ PP+ S+ GP A+VLAPTRELAQQIQ
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/56 (30%), Positives = 35/56 (62%)
Frame = +1
Query: 349 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ +L+R
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPV-LLQR 286
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.4 bits (120), Expect = 6e-08
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPP--IRRSDGPIALVLAPTRELAQQIQQVA 679
+QTGSGKTLAY+LP + + P R+ G A+++APTREL QQI VA
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +2
Query: 512 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRSD-GPIALVLAPTRELAQQIQQV 676
K+ +++TGSGKT AY++P + + Q I + G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +1
Query: 376 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
G+ + + F + N +Q+ + +++PT +Q++ P+A+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLAL 49
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHI-NNQPPIRRSDGPIALVLAPTRELAQQIQQ 673
+QTGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 90 AQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
F+E D + + + +G+K PTPIQ + P+ + +R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/55 (45%), Positives = 32/55 (58%)
Frame = +2
Query: 512 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
K+ + TGSGKTLAY+LP + + G AL++APTRELA QI V
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNV 91
Score = 28.7 bits (61), Expect = 0.82
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F+ N +++ V G+K+ TP+QA P+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPL 34
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQ 664
++TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRK-KWTSLDGLGALVISPTRELAIQ 126
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPI--ALVLAPTRELAQQIQQ 673
++ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/48 (47%), Positives = 29/48 (60%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQ 673
++TGSGKT A+ LP I + P G AL+L PTRELA QI +
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDE 93
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +2
Query: 503 LCWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
L K+ + TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 294 LLGKDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
+++TG+GKTLA++L A + P S +++L+PTRELA QI + A
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
++TGSGKTLA+++P I + + +G ++++PTRELA QI VA
Sbjct: 133 AKTGSGKTLAFLIPTI-EMLYALKFKPRNGTGVIIISPTRELALQIFGVA 181
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 340 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAML 510
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP +
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 511 ER 516
R
Sbjct: 202 GR 203
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQ 664
++TGSGKT+A+ +PA+ ++N P LV++PTRELA Q
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSD--NKSVPRVLVVSPTRELAIQ 251
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
++TGSGKT A+++P I H+ + + AL+L+P RELA Q +V
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKV 158
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/50 (42%), Positives = 34/50 (68%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
++Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKV 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
+SQ+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDV 203
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/50 (36%), Positives = 32/50 (64%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
R++ G+GKT A+++P++ ++ + ++ L+L PTRELA Q QV
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQT-----LILVPTRELALQTSQV 131
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA 528
FE+ + G+ G++ P+PIQ + PIA+ R LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPI 202
Score = 31.9 bits (69), Expect = 0.088
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAI-VHINNQP---PIRRSDG---------PIALVLAPTRELAQQIQ 670
+QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 671 Q 673
+
Sbjct: 273 E 273
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQI 667
TGSGKTL+Y++P + ++++ R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQV 221
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 33.1 bits (72), Expect = 0.038
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
++Q+G+GKT + + + I+ +R + AL+L+PTRELA QIQ V
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNV 108
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 340 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 489
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.3 bits (70), Expect = 0.066
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQI 667
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.3 bits (70), Expect = 0.066
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQI 667
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -1
Query: 262 NPNWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--T 89
+P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 142 SPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVET 200
Query: 88 RHDYFSDLVEDVYLNYGFFLTQG 20
H+Y+++LV+ ++ F +QG
Sbjct: 201 EHEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 468 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 343
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 328 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 459
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 328 PYEVEEYRNKHEVTVS 375
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 457 PLSLHLVAHNQENL--LLQSIE 398
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,778
Number of Sequences: 5004
Number of extensions: 59203
Number of successful extensions: 222
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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