Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20323
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 96 2e-20
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 86 2e-17
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 86 2e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 70 2e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 70 2e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 69 3e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 67 9e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 67 9e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 67 9e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 2e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 60 2e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 51 8e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 50 1e-06
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 50 2e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 47 1e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 1e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 2e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 46 2e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 46 3e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 45 5e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 44 7e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 9e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 9e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 9e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 44 1e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 43 2e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 43 2e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 43 2e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 43 2e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 43 2e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 43 2e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 43 2e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 42 5e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 7e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 41 9e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.001
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 40 0.001
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 40 0.001
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 0.002
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 39 0.003
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 39 0.003
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 39 0.003
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 36 0.025
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.033
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 35 0.043
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 35 0.043
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 35 0.057
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 34 0.075
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 34 0.075
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.099
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.23
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.23
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.23
At2g25460.1 68415.m03049 expressed protein 30 1.2
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.2
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 30 1.6
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 2.1
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 2.1
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 2.1
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 2.1
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 2.8
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 29 3.7
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.9
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.9
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 6.5
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.6
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 27 8.6
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 27 8.6
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 27 8.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/86 (50%), Positives = 54/86 (62%)
Frame = +1
Query: 259 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 438
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 439 QGVKTMGYKEPTPIQAQGWPIAMLER 516
+ VK G+ EPTPIQ+QGWP+AM R
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGR 137
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
++TGSGKTL+Y+LPAIVH+N QP + DGPI LVLAPTRELA QIQQ A
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEA 192
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 429
P + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 74.5 bits (175), Expect = 6e-14
Identities = 32/48 (66%), Positives = 42/48 (87%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQ 673
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 429
P + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 74.5 bits (175), Expect = 6e-14
Identities = 32/48 (66%), Positives = 42/48 (87%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQ 673
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQI 667
++TGSGKTL ++LP + HI +QPP+ DGPI LV+APTREL QQI
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 445 VKTMGYKEPTPIQAQGWPIAMLER 516
+K + Y++P PIQAQ PI M R
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQI 667
++TGSGKTL ++LP + HI +QPP+ DGPI LV+APTREL QQI
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 445 VKTMGYKEPTPIQAQGWPIAMLER 516
+K + Y++P PIQ Q PI M R
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/85 (32%), Positives = 47/85 (55%)
Frame = +1
Query: 262 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 441
S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 442 GVKTMGYKEPTPIQAQGWPIAMLER 516
+K Y++PT IQ Q PI + R
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/46 (60%), Positives = 38/46 (82%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQI 667
++TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLER 516
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEA 250
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLER 516
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEA 250
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLER 516
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEA 250
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +1
Query: 283 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 450
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 451 TMGYKEPTPIQAQGWPIAMLER 516
+ G+ PTPIQAQ WPIA+ R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
++TGSGKTL Y++PA + + + R+ GP L+LAPTRELA QIQ A
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSRN-GPTVLILAPTRELATQIQDEA 527
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/51 (50%), Positives = 40/51 (78%), Gaps = 3/51 (5%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPI---RRSDGPIALVLAPTRELAQQIQQ 673
++TGSGKT A++LP + +I+ PP+ ++GP A+V+APTRELAQQI++
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/93 (21%), Positives = 47/93 (50%)
Frame = +1
Query: 238 EHATPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 417
E A ++DS ++ ++++ D + + + +R ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 418 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ + V+ GYK+P+PIQ P+ + +R
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHIN-NQPPIRRSDGPIALVLAPTRELAQQIQQ 673
TG+GKT+AY+ P I H+ + P + RS G ALV+ PTREL Q+ +
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYE 122
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQ 670
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQ 318
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 445 VKTMGYKEPTPIQAQGWPIAMLER 516
V + G+ P+PIQAQ WPIAM R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 340 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 429
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQP---PIRRSDGPIALVLAPTRELAQQIQQV 676
TGSGKTL ++LP I+ + PI +GPIALV+ P+RELA+Q V
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDV 192
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +1
Query: 292 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 471
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 472 TPIQAQGWPIAMLER 516
TPIQ QG P+ + R
Sbjct: 121 TPIQVQGLPVVLSGR 135
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQP---PIRRSDGPIALVLAPTRELAQQIQQV 676
TGSGKTL ++LP I+ + PI +GPI L++ P+RELA+Q +V
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEV 241
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +1
Query: 295 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 474
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 475 PIQAQGWPIAMLER 516
PIQ QG P+ + R
Sbjct: 171 PIQVQGLPVILAGR 184
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +2
Query: 512 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRR-SDGP--IALVLAPTRELAQQ 664
K+ +++TG+GKT+A++LPAI + PP R S P I LV+ PTRELA Q
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +2
Query: 512 KEFSWRSQTGSGKTLAYILPAIVHINNQPPI-RRSDGPIALVLAPTRELAQQI 667
K+ R++TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHI-NNQPPIRRSDGPIALVLAPTRELAQQIQQ 673
R++TG+GKTLA+ +P I I R P+ LVLAPTRELA+Q+++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDG-----PIALVLAPTRELAQQIQQVA 679
+QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEA 257
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 WD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFP 426
WD + PF + +P P ++ + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 427 DYVQQGVKTMGYKEPTPIQAQGWPIAM 507
+ + ++ Y +PTP+Q PI +
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILL 194
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHI-NNQPPI---RRSDGPIALVLAPTRELAQQIQQV 676
++TGSGKTLA+ +PAI+H+ I + P LVL+PTRELA QI V
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDV 210
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 334 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 5/52 (9%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQP-PIRRSDG----PIALVLAPTRELAQQI 667
R++TG GKTLA++LP + + N P +R G P LVL PTRELA+Q+
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDG-----PIALVLAPTRELAQQIQQVA 679
+QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEA 244
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +1
Query: 256 WD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 426
WD PF N DP + + E Y + + SG V P+ F E +
Sbjct: 96 WDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLG 154
Query: 427 DYVQQGVKTMGYKEPTPIQAQGWPI 501
+ + ++ Y +PTP+Q PI
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPI 179
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +2
Query: 512 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRSD--GPI-ALVLAPTRELAQQ 664
K+ +++TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 512 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRSDGP---IALVLAPTRELAQQ 664
K+ +++TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINN-QPPIRRSDGPIALVLAPTRELAQQIQQ 673
R++TG+GKTLA+ +P I I R P LVLAPTRELA+Q+++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +2
Query: 503 LCWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQ 664
LC ++ ++TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQP----PIRRSDG-PIALVLAPTRELAQQIQQ 673
R++TG+GKTLA+ +P I + + RRS P LVLAPTRELA+Q+++
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDG-----PIALVLAPTRELAQQIQQVA 679
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEA 249
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
V SG +V P+ F + + D + ++ Y PTP+Q PI + ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDG-----PIALVLAPTRELAQQIQQVA 679
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEA 249
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
V SG +V P+ F + + D + ++ Y PTP+Q PI + ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHIN----NQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
S TGSGKTLAY+LP + + N + P +VL PTREL++Q+ +VA
Sbjct: 156 SHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVA 209
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHI---NNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 325 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 498
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 499 IAMLERI*LA 528
A+ + LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHI---NNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 69
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHI---NNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 110
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHI---NNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2
Query: 512 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
K+ ++TGSGKTLA+++PA V + + +G +V+ PTRELA Q + VA
Sbjct: 127 KDVLGAARTGSGKTLAFLIPA-VELLFKERFSPRNGTGVIVICPTRELAIQTKNVA 181
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHI----NNQPPIRRSDGPIALVLAPTRELAQQI 667
+++TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
S TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVRCLR---ALVVLPTRDLALQVKDV 113
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
++TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA
Sbjct: 198 ARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVA 246
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +1
Query: 274 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 453
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 454 MGYKEPTPIQAQGWPIAML 510
MG+ T IQA+ P M+
Sbjct: 172 MGFARMTQIQAKAIPPLMM 190
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +2
Query: 503 LC-WKEFSWRSQTGSGKTLAYILPAIVHINNQ---PPIRRSDGPIALVLAPTRELAQQIQ 670
LC +K+ + + TGSGKTLA+++P + + PP + + ++++PTREL+ QI
Sbjct: 50 LCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIY 107
Query: 671 QVA 679
VA
Sbjct: 108 NVA 110
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +2
Query: 533 QTGSGKTLAYILPAIVHINN---QPPIRRSDG-PIALVLAPTRELAQQI 667
Q+GSGKTLAY++P I + Q + S G P +VL PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQ 664
++TGSGKT A+++P + + P G AL+L+PTR+LA+Q
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP---QGGVRALILSPTRDLAEQ 113
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
FE N V +K GYK PTPIQ + P+ +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLIL 63
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQ 673
+QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ +
Sbjct: 102 AQTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAE 144
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHI----NNQPPIRRSDGPIALVLAPTRELAQQI 667
+++TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 349 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI + R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQ 664
TGSGKT A+I P ++ + +DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRP----STDGIRAVILSPARELAAQ 225
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQVA 679
+QTGSGKTL Y+L IN Q RS A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ----RSSVQ-AVIVVPTRELGMQVTKVA 164
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 367 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
TV GV H F E N + + +T+GYK+PTPIQA P+A+ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
TGSGKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGP--------IALVLAPTRELAQQI 667
+S TGSGKTLAY+LP + I RS A+++AP+REL QI
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Frame = +2
Query: 530 SQTGSGKTLAYILPAIVHI-----NNQPPIRRSDGP--IALVLAPTRELAQQIQQ 673
+QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 53 AQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQV 218
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA 528
FE+ + G+ G++ P+PIQ + PIA+ R LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQV 218
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA 528
FE+ + G+ G++ P+PIQ + PIA+ R LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
R++ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQV 241
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.3 bits (75), Expect = 0.075
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQV 211
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.3 bits (75), Expect = 0.075
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQV 211
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLAPTRELAQQIQQV 676
++ GSGKT ++L + ++ P +R P AL + PTRELA Q +V
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEV 181
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 626 ALVLAPTRELAQQIQQV 676
ALVLAPTRELAQQI++V
Sbjct: 110 ALVLAPTRELAQQIEKV 126
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 626 ALVLAPTRELAQQIQQV 676
ALVLAPTRELAQQI++V
Sbjct: 112 ALVLAPTRELAQQIEKV 128
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 626 ALVLAPTRELAQQIQQV 676
ALVLAPTRELAQQI++V
Sbjct: 110 ALVLAPTRELAQQIEKV 126
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 215 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 99
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 483
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 410 KKQIFLIMCNKV*RQWVTKNRRPFKLKAGR*LCWKEFSWRSQTGSGKTLAYILPA 574
K ++F C K Q+ + FK++ G K + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPI-ALVLAPTRELAQQI 667
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPI-ALVLAPTRELAQQI 667
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 527 RSQTGSGKTLAYILPAIVHINNQPPIRRSDGPI-ALVLAPTRELAQQI 667
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 235 AEHATPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQY 405
A+ A SW++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 260 AQVANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 15/69 (21%)
Frame = +2
Query: 512 KEFSWRSQTGSGKTLAYILPAIVHI--------------NNQPPIRRSDGPI-ALVLAPT 646
K+ ++TGSGKTLA+ LP + + + +DG + AL++ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 647 RELAQQIQQ 673
RELA Q+ +
Sbjct: 289 RELALQVTE 297
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 277 VGVKQNPNWASHVLPSREFFF 215
VGVK+ W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 286 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 441
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 286 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 441
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = +2
Query: 503 LCWKEFSWRSQTGSGKTLAYILPAIVHINN----QPPIRRSDGP-----IALVLAPTREL 655
L K+ ++TGSGKT Y+ P I + N R + P I+L+L P L
Sbjct: 115 LSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVML 174
Query: 656 AQQI 667
+Q+
Sbjct: 175 CEQV 178
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 96 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 242
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 277 VGVKQNPNWASHVLPSREF 221
VGVK+ W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 277 VGVKQNPNWASHVLPSREF 221
VGVK+ W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 277 VGVKQNPNWASHVLPSREF 221
VGVK+ W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,414
Number of Sequences: 28952
Number of extensions: 300578
Number of successful extensions: 985
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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