Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20322
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    48   9e-08
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.8  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   4.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 47.6 bits (108), Expect = 9e-08
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
 Frame = +1

Query: 271 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPN 447
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+     
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQT 204

Query: 448 GFRQNVGLHLA---SHCAHK*PTAIRRGDG-PIALVLAPTRELA 567
           G  +     L    +  + K P         P+ ++++PTRELA
Sbjct: 205 GSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELA 248


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 543 DQSNRTITSPNSG 505
           DQSNR + SP++G
Sbjct: 398 DQSNRAVFSPHAG 410


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 506 VGYLCAQWLARCRPTFCRN 450
           +GY+C   +  CRP  C N
Sbjct: 253 LGYICEINVDDCRPGACHN 271


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 537 FGLGAYQRVSTTNSAVAAD 593
           F LG Y   + T +AVAAD
Sbjct: 97  FSLGGYAAGTATFTAVAAD 115



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 75  GLATVAIDLEDLEALVGKKNSLEGRTCDA 161
           G+   +I+ +DL A  G KN+L     DA
Sbjct: 345 GVMIWSIETDDLHATCGTKNALLHAVNDA 373


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 182 VKQNPNLGVACSALQRI 132
           +K+N NLG AC  +  +
Sbjct: 752 MKKNRNLGAACGRIHPV 768


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 182 VKQNPNLGVACSALQRI 132
           +K+N NLG AC  +  +
Sbjct: 752 MKKNRNLGAACGRIHPV 768


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 182 VKQNPNLGVACSALQRI 132
           +K+N NLG AC  +  +
Sbjct: 752 MKKNRNLGAACGRIHPV 768


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 182 VKQNPNLGVACSALQRI 132
           +K+N NLG AC  +  +
Sbjct: 752 MKKNRNLGAACGRIHPV 768


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,720
Number of Sequences: 336
Number of extensions: 3497
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)