Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20322
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 3e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 61 2e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 58 8e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 51 1e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 45 8e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 7e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 38 0.001
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 37 0.003
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 36 0.004
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 35 0.009
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.061
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 32 0.081
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 31 0.11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 31 0.14
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 31 0.19
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 28 1.00
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.00
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 27 2.3
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.3
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 2.3
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 27 2.3
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 5.3
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 5.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 5.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 5.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.0
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1... 25 9.3
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 25 9.3
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz... 25 9.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 99 bits (238), Expect = 3e-22
Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR + E+ V G+ V P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++V
Sbjct: 104 YRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163
Query: 436 GV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
G+ G + + L + + GDGPI LVLAPTRELA
Sbjct: 164 GISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA 208
Score = 70.9 bits (166), Expect = 1e-13
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Frame = +2
Query: 149 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEGIEINTR*L*VALRFIILFNTLKKQ 328
N+ + DW + +L PF K+FY H V RS EV + L T ++
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 329 IFLIMCNKV*RQWVTKNRRPFKLKAGR*LCLERI*LAYQ-TGSGKTLAYILPAIVHINNQ 505
F K +Q + P + +A R + TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 506 PLF----GEVMVRLLWSWRLPES*HNKFSSCCRFGHTSYVRNTCVFGG 637
PL G +++ L + L + C +FG +S +RNTCV+GG
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQE---CTKFGKSSRIRNTCVYGG 232
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +1
Query: 274 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV-PNG 450
+ + G++ P+ + + + ++GY++PT IQAQ P SG++++GV G
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG 465
Query: 451 FRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ + L K ++ G+GPIA+++ PTRELA
Sbjct: 466 SGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELA 504
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 58.4 bits (135), Expect = 8e-10
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Frame = +1
Query: 250 RRYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 429
R + + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 229 RILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
Query: 430 LVGV-PNGFRQNVGLHLASHCA-HK*P--TAIRRGDGPIALVLAPTRELA 567
L+G+ G + + A K P T GP A+VLAPTRELA
Sbjct: 289 LIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELA 338
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 51.2 bits (117), Expect = 1e-07
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Frame = +1
Query: 253 RYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 423
RY KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++G
Sbjct: 145 RYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAG 202
Query: 424 KNLVGV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+++VG+ G + V + + P LV++PTRELA
Sbjct: 203 RDVVGIAETGSGKTVAFGIPA--LQYLNGLSDNKSVPRVLVVSPTRELA 249
Score = 28.3 bits (60), Expect = 1.00
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHIN 499
+TGSGKT+A+ +PA+ ++N
Sbjct: 210 ETGSGKTVAFGIPALQYLN 228
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 45.2 bits (102), Expect = 8e-06
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Frame = +1
Query: 274 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNG 450
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ G
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 451 FRQNVG--LHLASHCAHK*PTAI----RRGDG-------PIALVLAPTREL 564
+ G + S K P A+ G G P L+LAPTREL
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTREL 267
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.3 bits (90), Expect = 2e-04
Identities = 27/84 (32%), Positives = 39/84 (46%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
F+ N +++ V G+K+ TP+QA P+ + K+LV V L C
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV-VEAVTGSGKTLAYLLPCFD 61
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
K G AL++APTRELA
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELA 85
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 38.7 bits (86), Expect = 7e-04
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Frame = +1
Query: 286 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNV 465
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 466 GLHLAS--HCAHK*PTAIRRGDGPIALVLAPTRELAXXXXXXXXXWTHILCS*HV 624
+L K G AL+L PTRELA T CS H+
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLT-AFCSKHI 119
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+ G + A
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGL-----AQTGSGKTAAFAL 102
Query: 496 K*PTAIRRGDGP-IALVLAPTRELA 567
+ P A+VLAPTRELA
Sbjct: 103 PVIQELWNNPSPFFAVVLAPTRELA 127
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 36.7 bits (81), Expect = 0.003
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNGFRQNVGLHLASHCA 492
FE+ + G+ G++ P+PIQ + PIA+SG++++ NG + + S
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS--L 103
Query: 493 HK*PTAIRRGDGPIALVLAPTRELA 567
K T + L+L PTRELA
Sbjct: 104 EKVDTKKSKIQ---TLILVPTRELA 125
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
F+ + + + G+K PTPIQ + P+ + G+++VG+ + H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
T AL+L+P RELA
Sbjct: 131 LKSTL--ANSNTRALILSPNRELA 152
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 438
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 446 TGSGKTLAYILPAIVHINNQP 508
TGSGKT A+I+P + + +P
Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.061
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 271 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPN 447
E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++++ +
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQS 67
Query: 448 GFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
G + + ++R AL+L+PTRELA
Sbjct: 68 GTGKTATFSIG--ILQSIDLSVRDTQ---ALILSPTRELA 102
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 31.9 bits (69), Expect = 0.081
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 367 GYKEPTPIQAQGWPIAMSGKNLVG---VPNGFRQNVGLHLASHCAHK*PTAIRRGDGPI- 534
G+ +P PIQ+ P A G +++G +G G+ + HC +R D
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-------LRNVDAKYV 193
Query: 535 -ALVLAPTRELA 567
ALV+APTRELA
Sbjct: 194 QALVVAPTRELA 205
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 446 TGSGKTLAYILPAIVH 493
TGSGKTLA+ +P + H
Sbjct: 168 TGSGKTLAFGIPILEH 183
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHINNQP 508
QTGSGKTLAY+LP + + P
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLP 207
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 307 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVPNGFRQNVGLHLA 480
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 481 SHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ + + + P A+ LAP+RELA
Sbjct: 173 TMLSRVDASVPK----PQAICLAPSRELA 197
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 31.1 bits (67), Expect = 0.14
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +1
Query: 307 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPN-GFRQNVG--LHL 477
+ +F E + +K + T IQ Q P A+ G++++G G + + + L
Sbjct: 38 VDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPL 97
Query: 478 ASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ K T++ DG ALV++PTRELA
Sbjct: 98 IENLYRKKWTSL---DGLGALVISPTRELA 124
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 437 AYQTGSGKTLAYILPAIVHI 496
A +TGSGKTLA+I+P I ++
Sbjct: 82 AAKTGSGKTLAFIVPLIENL 101
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 30.7 bits (66), Expect = 0.19
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 307 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKNLVGVPNGFRQNVGLHLAS 483
I F++ N + +G+ G++ P+ IQ + PI L +G + ++
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSIS- 76
Query: 484 HCAHK*PTAIRRGDGPIALVLAPTRELA 567
K T++++ AL+LAPTRELA
Sbjct: 77 -VLQKIDTSLKQCQ---ALILAPTRELA 100
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 28.3 bits (60), Expect = 1.00
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 437 AYQTGSGKTLAYILPAI 487
A +TGSGKTLA+++P I
Sbjct: 132 AAKTGSGKTLAFLIPTI 148
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 28.3 bits (60), Expect = 1.00
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 265 YFYTFDFIW*SFENCRMWIIKVFVERLE*NRIPIW 161
+FY F F + F +CR + I +F+ + N +P +
Sbjct: 74 FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFF 108
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
F + ++ +K + EPT IQ + G+N +G G + G A+
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIG---GAKTGSG-KTAAFALP 64
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
+ G AL+L PTRELA
Sbjct: 65 IIEKWSKDPSGIFALILTPTRELA 88
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHINNQP 508
+TGSGKT A+ LP I + P
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP 73
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 446 TGSGKTLAYILPAI 487
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 449 GSGKTLAYILPAIVHINNQPLFGEVMVRLLWSWRLPE 559
GSG+TLA + P ++ +N + LW+W L E
Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 149 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEGI 259
N+ R W + P ++N Y HP L++ Y+ +GI
Sbjct: 209 NLTRTFWANDEPSPVDQNMYGSHPYYLEQR-YKADGI 244
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 378 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVF 265
FF Y ++ I+ CFF +NR T+S +VF
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVF 53
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 214 WIIKVFVERLE*NRIPIWASHVLPSREF 131
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 446 TGSGKTLAYILPAI 487
TGSGKT+AY+ P +
Sbjct: 92 TGSGKTIAYLFPIL 105
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 446 TGSGKTLAYILPAIVHINNQPLFGEVM 526
TG GK+L++++PA++ Q G+VM
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVM 1240
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 446 TGSGKTLAYILPAIVHINNQPLFGEVM 526
TG GK+L++++PA++ Q G+VM
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVM 1240
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 367 PLSLHLVAHNQENL--LLQSIE 308
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = -1
Query: 414 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIPSTSYGD 235
S +P S + + C Y+ + + I + ++ +L SY+ F+ + SY
Sbjct: 19 SLKPLFSQYRKHIYFNDCFYSTFNKTKTIIVVILSGKLSDLIDFKSYIEFVLKTNNSYSA 78
Query: 234 LL 229
+L
Sbjct: 79 IL 80
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 369 THCLYT-LLHIIRKICFFKVLNRIMNLNATYSYLVFISIPSTSYGDLLRTVGCGS 208
+H ++ L H K K LN + + YSY+ + ++Y D++ G GS
Sbjct: 300 SHIVFAQLTHYKNKKDEKKALNLLAWILKLYSYMSLFILFGSNYSDIVLLFGAGS 354
>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 211 STSYSSQKITI*SRRYRNKHEVTVSGVEVHNPIQYFEEANFPDY 342
S + + KIT+ + Y++ H + + GV N + E P++
Sbjct: 20 SEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEF 63
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 446 TGSGKTLAYILPAIV 490
TG GK+L Y LPA++
Sbjct: 543 TGGGKSLCYQLPAVI 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,045
Number of Sequences: 5004
Number of extensions: 57790
Number of successful extensions: 205
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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