Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20322
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 64 7e-11
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 2e-09
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 57 1e-08
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 48 9e-06
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 3e-04
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 39 0.003
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 34 0.11
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 34 0.11
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 33 0.26
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 31 0.80
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 30 1.4
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 28 7.4
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 28 7.4
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 64.5 bits (150), Expect = 7e-11
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Frame = +1
Query: 250 RRYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 429
R +R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++
Sbjct: 81 RIFREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRD 140
Query: 430 LVGVP---NGFRQNVGLHLASHCAHK*PTAIRRGD---GPIALVLAPTRELA 567
++GV +G + L P R D GP AL+LAPTRELA
Sbjct: 141 IIGVAETGSGKTAAFAIPLLVWIMGL-PKIERDNDADQGPYALILAPTRELA 191
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Frame = +1
Query: 259 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 438
R K + VSG P F F + + ++ + Y +PT IQ Q PIA+SG++++G
Sbjct: 500 RKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIG 559
Query: 439 VPNGFRQNVGLHLASHCAH-K*PTAIRRGDGPIALVLAPTREL 564
+ L H ++ GDGPI L+ APTREL
Sbjct: 560 IAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTREL 602
Score = 39.5 bits (88), Expect = 0.002
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 161 PDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEGI 259
P+ + +PFNKNFY+ HP + K+S E++ +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDL 499
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/104 (39%), Positives = 52/104 (50%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ + G
Sbjct: 65 YRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---FILPG---- 117
Query: 436 GVPNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
H H+ ++ GDGPI LVL PTRELA
Sbjct: 118 --------------IVHINHQ--PLLQPGDGPIVLVLCPTRELA 145
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 470 YILPAIVHINNQPLF----GEVMVRLLWSWRLPES*HNKFSSCCRFGHTSYVRNTCVFGG 637
+ILP IVHIN+QPL G +++ L + L + S G +R+TC++GG
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYS---VGKHCKLRSTCIYGG 169
Query: 638 A 640
A
Sbjct: 170 A 170
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Frame = +1
Query: 259 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 438
R K+ + + G + PI+ F + N P + + ++ PTPIQ Q MSG++++G
Sbjct: 55 RWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIG 114
Query: 439 V-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTREL 564
+ G + + L + GD P+AL+L PTREL
Sbjct: 115 LAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTREL 157
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 423
+R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+ G
Sbjct: 141 FRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPLMAHG 200
Query: 424 KNLVG 438
G
Sbjct: 201 PKKSG 205
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +1
Query: 250 RRYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 429
++ R+K E+ V G V +P+ F +F + + + + GY PTPIQ Q P+ +SG++
Sbjct: 176 KQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRD 235
Query: 430 LV 435
++
Sbjct: 236 VM 237
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = +1
Query: 280 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQ 459
VSG I F E F + + + GY+ PTP+Q PI M+G++L+ Q
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMAC----AQ 524
Query: 460 NVGLHLASHCAHK*PTAIRRG-----DGPIALVLAPTRELA 567
A++ + I++G P+AL +APTRELA
Sbjct: 525 TGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELA 565
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 45.2 bits (102), Expect = 5e-05
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Frame = +1
Query: 271 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPN 447
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 757
Query: 448 GFRQNVGLHL----ASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
G + L + A ++ P A+ +APTRELA
Sbjct: 758 GSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELA 801
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHINNQPL 511
QTGSGKT A++LP + + N L
Sbjct: 756 QTGSGKTAAFLLPVMTSMMNAGL 778
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 271 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 175
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +1
Query: 274 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGF 453
+ V G P++ + + + +K Y++PTPIQAQ P+ MSG++++ +
Sbjct: 93 IHVRGKNAPKPVKTWAQTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTP 152
Query: 454 RQNVGLHLASHC 489
+ + + + C
Sbjct: 153 TRELAIQIHREC 164
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 146 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEGIEIN 268
+ ++ D +V QPF K+FY P + K +P E + ++
Sbjct: 49 EELQPVDHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLS 89
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +1
Query: 307 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASH 486
++ F + G+ G+ PT IQ QG P+A+SG++++G L
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 487 CAHK*PTAIRRGDGPIALVLAPTRELA 567
DG ALV++PTRELA
Sbjct: 109 IETLWRQKWTSMDGLGALVISPTRELA 135
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 437 AYQTGSGKTLAYILPAI 487
A +TGSGKTLA+++P I
Sbjct: 93 AAKTGSGKTLAFLIPII 109
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
FE+ + G+ G+ +P+PIQ + P+A++G++++ +L
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
T + ALVL PTRELA
Sbjct: 109 TDTTK----NCIQALVLVPTRELA 128
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
FE+ + G+ G+ +P+PIQ + P+A++G++++ +L
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
T + ALVL PTRELA
Sbjct: 109 TDTTK----NCIQALVLVPTRELA 128
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 349 QGVKTMGYKEPTPIQAQGWPIAMSGKNL---VGVPNGFRQNVGLHLASHCAHK*PTAIRR 519
+ V +G+ PTPIQA P+A+ GK++ G L + ++ PT +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYR-PT---Q 78
Query: 520 GDGPIALVLAPTRELA 567
LV+ PTRELA
Sbjct: 79 SPAIRVLVITPTRELA 94
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 307 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
I FE+ + + + V GYK+PTP+Q PI ++L+
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLM 916
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 265 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 420
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 292 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 405
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 437 AYQTGSGKTLAYILPAIVHINNQPLFGEVMVRL 535
A QTGSGKTLAY+ P + + ++ RL
Sbjct: 421 AAQTGSGKTLAYLAPLVHRLREDEERHGILARL 453
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 349 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNGFRQNVG-LHLASHCAHK*PTAIRRG 522
QG+K MG+ T IQ + + G++L+G G + + L +K R G
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNG 644
Query: 523 DGPIALVLAPTRELA 567
G ++++PTREL+
Sbjct: 645 TG--VIIISPTRELS 657
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 437 AYQTGSGKTLAYILPAI 487
A +TGSGKTLA+++P +
Sbjct: 615 AAKTGSGKTLAFLVPVV 631
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 437 AYQTGSGKTLAYILPAIVHI 496
A +TGSGKTLA+ +P I HI
Sbjct: 174 AAETGSGKTLAFGIPIIQHI 193
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 122 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 12
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 514 RRGDGPIALVLAPTRELA 567
+RG P LV+APTRELA
Sbjct: 143 KRGRAPKVLVMAPTRELA 160
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 449 GSGKTLAYILPAIVHINNQPLFGEV 523
GSGK LAY+LP I I ++ E+
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQEL 258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,962,172
Number of Sequences: 59808
Number of extensions: 429883
Number of successful extensions: 1167
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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