Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20322
         (642 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    50   5e-08
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   2.0  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          23   8.2  
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    23   8.2  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 50.4 bits (115), Expect = 5e-08
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = +1

Query: 271 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG---V 441
           +V VSG    + ++ FE +   + V   V+   Y +PTPIQ    PI ++G++L+     
Sbjct: 161 QVRVSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQT 220

Query: 442 PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
            +G      L +  H   K  +   R   P  +++APTRELA
Sbjct: 221 GSGKTAAFMLPMIHHLLDKEDSLELRTRNPYIVIVAPTRELA 262


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -2

Query: 146 ALQRILFSHQSLQILQ------IYCHRCQTETNYRRIC 51
           A +R+  SHQS  IL+      I CHRC+   + +R C
Sbjct: 180 AQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDC 217


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +3

Query: 342 CATRCKDNGLQRTDAHSSSRLADSYVWKEFSWRTKRVPAKRWPT 473
           C T  K   +    A  S   A         WR K +P  RW T
Sbjct: 211 CGTGWKYRSISSLHAPPSHPGAHRAAEPRLDWRIKILPLPRWNT 254


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 438 RTKRVPAKRWPT 473
           R +R+PA++WPT
Sbjct: 203 RQQRLPAQQWPT 214


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,734
Number of Sequences: 2352
Number of extensions: 14045
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)