Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20322
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   2e-09
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 53.6 bits (123), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 34/55 (61%)
 Frame = +1

Query: 271 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLM 237



 Score = 25.0 bits (52), Expect = 0.62
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 443 QTGSGKTLAYILPAI 487
           QTGSGKT A+ +P I
Sbjct: 241 QTGSGKTAAFAVPII 255


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -2

Query: 467 PTFCRNPFGTPTKFFPDI--AIGQ 402
           P  CR   G  TK  PDI  AIGQ
Sbjct: 22  PHTCRTKNGDYTKIMPDILTAIGQ 45


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -3

Query: 169 PIWASHVLPSREFFFP 122
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -3

Query: 169 PIWASHVLPSREFFFP 122
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 491 AQWLARCRPTFCRNPFGTPT 432
           AQ+   C P+  R P G PT
Sbjct: 388 AQFATPCTPSPPRGPGGVPT 407


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -2

Query: 77  TETNYRRICCLLQIWNHRFHGYYSN 3
           T  N RR    ++ W H F   Y N
Sbjct: 416 TVENNRRNPWFVEFWEHHFQCRYPN 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,127
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)