Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20322
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 102 2e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 97 7e-21
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 97 7e-21
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 81 8e-16
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 81 8e-16
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 81 8e-16
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 78 4e-15
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 77 8e-15
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 75 4e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 72 4e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 67 8e-12
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 62 2e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 57 1e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 52 4e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 52 4e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 51 8e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 49 2e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 4e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 45 5e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 7e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 42 5e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 42 5e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 41 6e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 39 0.002
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 39 0.003
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 39 0.003
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 37 0.013
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.040
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 35 0.040
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 35 0.053
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 35 0.053
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 35 0.053
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 34 0.092
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 34 0.092
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 34 0.092
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 34 0.092
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 33 0.16
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 33 0.16
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 32 0.37
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 32 0.37
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 31 0.65
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 31 0.65
At2g25460.1 68415.m03049 expressed protein 30 1.1
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 30 1.1
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 29 2.0
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.0
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 29 2.0
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.6
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 29 3.5
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat... 28 4.6
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 4.6
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 28 4.6
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal... 28 6.1
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.0
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 27 8.0
At3g58200.1 68416.m06489 meprin and TRAF homology domain-contain... 27 8.0
At3g42725.1 68416.m04461 expressed protein 27 8.0
At1g13810.1 68414.m01621 expressed protein ; expression supporte... 27 8.0
At1g07560.1 68414.m00809 leucine-rich repeat protein kinase, put... 27 8.0
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 102 bits (244), Expect = 2e-22
Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR E+TV G ++ P++ F + FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 81 YRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
Query: 436 GV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
G+ G + + L + + GDGPI LVLAPTRELA
Sbjct: 141 GIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELA 185
Score = 54.0 bits (124), Expect = 8e-08
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHINNQPLF----GEVMVRLLWSWRLPES*HNKFSSCCRFGHTSY 610
+TGSGKTL+Y+LPAIVH+N QP+ G +++ L + L + S +FG +S
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS---KFGSSSK 200
Query: 611 VRNTCVFGG 637
++ TC++GG
Sbjct: 201 IKTTCIYGG 209
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 97.5 bits (232), Expect = 7e-21
Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR + +++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 147 YRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Query: 436 GVPNGFRQNVGLHLASHCAH-K*PTAIRRGDGPIALVLAPTRELA 567
G+ +L H + + DGPI L+LAPTRELA
Sbjct: 207 GIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELA 251
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHINNQPLFGE---VMVRLLWSWRLPES*HNKFSSCCRFGHTSYV 613
+TGSGKTLAY+LPA+VH++ QP G+ +V +L R E +FG S V
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTR--ELAVQIQEESRKFGLRSGV 267
Query: 614 RNTCVFGGA 640
R+TC++GGA
Sbjct: 268 RSTCIYGGA 276
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 97.5 bits (232), Expect = 7e-21
Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR + +++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 147 YRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Query: 436 GVPNGFRQNVGLHLASHCAH-K*PTAIRRGDGPIALVLAPTRELA 567
G+ +L H + + DGPI L+LAPTRELA
Sbjct: 207 GIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELA 251
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHINNQPLFGE---VMVRLLWSWRLPES*HNKFSSCCRFGHTSYV 613
+TGSGKTLAY+LPA+VH++ QP G+ +V +L R E +FG S V
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTR--ELAVQIQEESRKFGLRSGV 267
Query: 614 RNTCVFGGA 640
R+TC++GGA
Sbjct: 268 RSTCIYGGA 276
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 80.6 bits (190), Expect = 8e-16
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
Y +HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V
Sbjct: 140 YSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
Query: 436 GV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ G + +G +L H GP LVL+PTRELA
Sbjct: 200 AIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVH---INNQPLFGEVMVRLLWSWRLPES*HNKFSSCCRFGHTSYV 613
+TGSGKTL Y++P +H I N G ++ L + L + +FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEE---AVKFGRSSRI 259
Query: 614 RNTCVFGGA 640
TC++GGA
Sbjct: 260 SCTCLYGGA 268
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 80.6 bits (190), Expect = 8e-16
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
Y +HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V
Sbjct: 140 YSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
Query: 436 GV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ G + +G +L H GP LVL+PTRELA
Sbjct: 200 AIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVH---INNQPLFGEVMVRLLWSWRLPES*HNKFSSCCRFGHTSYV 613
+TGSGKTL Y++P +H I N G ++ L + L + +FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEE---AVKFGRSSRI 259
Query: 614 RNTCVFGGA 640
TC++GGA
Sbjct: 260 SCTCLYGGA 268
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 80.6 bits (190), Expect = 8e-16
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
Y +HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V
Sbjct: 140 YSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
Query: 436 GV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ G + +G +L H GP LVL+PTRELA
Sbjct: 200 AIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVH---INNQPLFGEVMVRLLWSWRLPES*HNKFSSCCRFGHTSYV 613
+TGSGKTL Y++P +H I N G ++ L + L + +FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEE---AVKFGRSSRI 259
Query: 614 RNTCVFGGA 640
TC++GGA
Sbjct: 260 SCTCLYGGA 268
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 78.2 bits (184), Expect = 4e-15
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR + E+ V G +V PIQ++ + + +K + Y++P PIQAQ PI MSG++ +
Sbjct: 378 YRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCI 437
Query: 436 GV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTREL 564
GV G + +G L K + GDGPI LV+APTREL
Sbjct: 438 GVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTREL 481
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 77.4 bits (182), Expect = 8e-15
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR + + VSG +VH P++ FE+ F + +K Y++PT IQ Q PI +SG++++
Sbjct: 210 YRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVI 269
Query: 436 GVPNGFRQNVGLHLASHCAH-K*PTAIRRGDGPIALVLAPTRELA 567
G+ + H ++R +GPI ++ APTRELA
Sbjct: 270 GIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELA 314
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 74.9 bits (176), Expect = 4e-14
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR + E+ V G +V PI+++ + + +K + Y++P PIQ Q PI MSG++ +
Sbjct: 511 YRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCI 570
Query: 436 GV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTREL 564
GV G + +G L K + GDGPI LV+APTREL
Sbjct: 571 GVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTREL 614
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 71.7 bits (168), Expect = 4e-13
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
YR +HEVT +G + P FE + P + + + + G+ PTPIQAQ WPIA+ +++V
Sbjct: 417 YRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIV 476
Query: 436 GV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ G + +G + + + R +GP L+LAPTRELA
Sbjct: 477 AIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELA 520
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIV---HINNQPLFGEVMVRLLWSWRLPES*HNKFSSCCRFGHTSYV 613
+TGSGKTL Y++PA + H N G ++ L + L ++ RFG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDE---ALRFGRSSRI 536
Query: 614 RNTCVFGGA 640
TC++GGA
Sbjct: 537 SCTCLYGGA 545
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 67.3 bits (157), Expect = 8e-12
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Frame = +1
Query: 259 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 438
R + +TV+G ++ PI+ F + FP + + +K G PTPIQ QG P+ +SG++++G
Sbjct: 80 RKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIG 139
Query: 439 VP-NGFRQNVGLHLAS---HCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ G + + L + I G+GPIALV+ P+RELA
Sbjct: 140 IAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELA 186
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 446 TGSGKTLAYILPAIV 490
TGSGKTL ++LP I+
Sbjct: 143 TGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 62.5 bits (145), Expect = 2e-10
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Frame = +1
Query: 259 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 438
R + + V+G ++ PI+ F++ FP V +K G +PTPIQ QG P+ ++G++++G
Sbjct: 129 RKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Query: 439 VP-NGFRQNVGLHLAS---HCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ G + + L + I G+GPI L++ P+RELA
Sbjct: 189 IAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELA 235
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Frame = +1
Query: 250 RRYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 429
R +R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++
Sbjct: 293 RIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRD 352
Query: 430 LVGVP---NGFRQNVGLHLASHCAHK*P-TAIRRGDGPIALVLAPTRELAXXXXXXXXXW 597
++G+ +G L + ++ + P + +GP A+V+APTRELA +
Sbjct: 353 VIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF 412
Query: 598 THIL 609
H L
Sbjct: 413 AHYL 416
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 51.6 bits (118), Expect = 4e-07
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 259 RNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 432
R K ++ V G V P+ F P + ++T GY PTPIQ Q P A++GK+L
Sbjct: 91 RRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSL 150
Query: 433 VG---VPNGFRQNVGLHLASHCA---HK*PTAIRRGDGPIALVLAPTREL 564
+ +G + + + S C + P+ RR P+A+VLAPTREL
Sbjct: 151 LASADTGSGKTASFLVPIISRCTTYHSEHPSDQRR--NPLAMVLAPTREL 198
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 51.6 bits (118), Expect = 4e-07
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Frame = +1
Query: 259 RNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 432
+ K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP + G++L
Sbjct: 97 QQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDL 154
Query: 433 VGVP---NGFRQNVGLHLASHCAHK*PTAIRRGD---GPIALVLAPTRELA 567
+G+ +G G+ H K I G P LVL+PTRELA
Sbjct: 155 IGIAKTGSGKTLAFGIPAIMHVLKK-NKKIGGGSKKVNPTCLVLSPTRELA 204
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 50.8 bits (116), Expect = 8e-07
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Frame = +1
Query: 259 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 426
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 427 NLVG-VPNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
P G + K P+ DG A++L+P RELA
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELA 223
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 355 VKTMGYKEPTPIQAQGWPIAMSGKNLVGV-PNGFRQNVGLHLASHCAHK*PTAIRRGDGP 531
V + G+ P+PIQAQ WPIAM +++V + G + +G +L H GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG-YLIPGFMHLQRIHNDSRMGP 302
Query: 532 IALVLAPTRELA 567
LVL+PTRELA
Sbjct: 303 TILVLSPTRELA 314
Score = 36.3 bits (80), Expect = 0.017
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVH---INNQPLFGEVMVRLLWSWRLPES*HNKFSSCCRFGHTSYV 613
+TGSGKTL Y++P +H I+N G ++ L + L + +FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVE---ALKFGKSSKI 330
Query: 614 RNTCVFGGA 640
C++GGA
Sbjct: 331 SCACLYGGA 339
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 256 YRNKHEVTVSGVEVHNPIQYFEEANFPD 339
Y KHE+TVSG +V P+ FE P+
Sbjct: 143 YCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 45.2 bits (102), Expect = 4e-05
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +1
Query: 277 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL-VGVPNGF 453
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L G
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 454 RQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ L + + +R L+L PTRELA
Sbjct: 216 GKTAAFALPT--LERLLFRPKRVFATRVLILTPTRELA 251
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 364 MGYKEPTPIQAQGWPIAMSGKN-LVGVPNGFRQNVG-LHLASHCAHK*PTAIRRGDGPIA 537
MG++ PT +QAQ P+ +SG++ LV P G + + L H + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 538 LVLAPTREL 564
LV+ PTREL
Sbjct: 108 LVIVPTREL 116
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.4 bits (100), Expect = 7e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
FE N V +K GYK PTPIQ + P+ +SG ++V + L
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIP-MLE 88
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
K + +G G AL+L+PTR+LA
Sbjct: 89 KLKQHVPQG-GVRALILSPTRDLA 111
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 41.5 bits (93), Expect = 5e-04
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Frame = +1
Query: 274 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNG 450
+ SG V P+ F E + + + ++ Y +PTP+Q PI +G++L+ G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 451 FRQNV--------GLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ G+ H P + RG P+A++L+PTRELA
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIER--PRGV-RGVYPLAVILSPTRELA 237
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Frame = +1
Query: 274 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNG 450
+ SG V P+ F E + + + ++ Y +PTP+Q PI + G++L+ G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 451 FRQNVGLHLASHCAHK*PTAIRRGDG-----PIALVLAPTRELA 567
+ ++R G P+A++L+PTRELA
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELA 250
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 41.1 bits (92), Expect = 6e-04
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Frame = +1
Query: 292 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGL 471
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+ G
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 472 H-------LASHCAHK*PTAIRRGDGP-IALVLAPTRELA 567
L + P RR D A VL+PTRELA
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELA 102
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-NGFRQNVGLHL-ASHC 489
FE + D + +K MG+ T IQA+ P M G++++G G + + + A
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVEL 215
Query: 490 AHK*PTAIRRGDGPIALVLAPTRELA 567
++ R G G LV+ PTRELA
Sbjct: 216 LYRVKFTPRNGTG--VLVICPTRELA 239
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Frame = +1
Query: 274 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNG 450
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ G
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 451 FRQNVGLHLASHCAHK*PTAIRRGDG-----PIALVLAPTRELA 567
+ + R G P A++L+PTRELA
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Frame = +1
Query: 274 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNG 450
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ G
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 451 FRQNVGLHLASHCAHK*PTAIRRGDG-----PIALVLAPTRELA 567
+ + R G P A++L+PTRELA
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 36.7 bits (81), Expect = 0.013
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNGFRQNVGLHLAS-HC 489
F++ +G++ G+K T +Q P+ + GK+++ G + V L S
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 490 AHK*PTAIRRGDGP--IALVLAPTRELA 567
K P A R P I LV+ PTRELA
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELA 169
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 35.1 bits (77), Expect = 0.040
Identities = 25/88 (28%), Positives = 42/88 (47%)
Frame = +1
Query: 304 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLAS 483
PI+ F++ D V +GV GYK+P+ IQ + + G++++ + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 484 HCAHK*PTAIRRGDGPIALVLAPTRELA 567
C + R+ LVL+P+RELA
Sbjct: 80 VCQIV-NISSRKVQ---VLVLSPSRELA 103
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 35.1 bits (77), Expect = 0.040
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
FE ++ + K +G ++PTP+Q P ++G++++G+ A H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAA-FALPILH 118
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
+ G ALV+ PTRELA
Sbjct: 119 R---LAEDPYGVFALVVTPTRELA 139
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 34.7 bits (76), Expect = 0.053
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNGFRQNVGLHLASHCA 492
FE+ + G+ G++ P+PIQ + PIA++G++++ NG + A+ C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT-----AAFCI 187
Query: 493 HK*PTAIRRGDGPIALVLAPTRELA 567
+ + A+++ PTRELA
Sbjct: 188 PVLEKIDQDNNVIQAVIIVPTRELA 212
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 34.7 bits (76), Expect = 0.053
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNGFRQNVGLHLASHCA 492
FE+ + G+ G++ P+PIQ + PIA++G++++ NG + A+ C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT-----AAFCI 187
Query: 493 HK*PTAIRRGDGPIALVLAPTRELA 567
+ + A+++ PTRELA
Sbjct: 188 PVLEKIDQDNNVIQAVIIVPTRELA 212
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 34.7 bits (76), Expect = 0.053
Identities = 27/97 (27%), Positives = 45/97 (46%)
Frame = +1
Query: 277 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFR 456
T G+E PI F + + V +GV G+++P+ IQ + + G++++
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 457 QNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ S C T+ R AL+L+PTRELA
Sbjct: 84 GKTSMIALSVCQVV-DTSSREVQ---ALILSPTRELA 116
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 33.9 bits (74), Expect = 0.092
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 349 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNGFRQNVGLHL-ASHCAHK*PTAIRRG 522
+ +K G++ T +Q PI + GK+++ G + V L A K P A R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 523 DGP--IALVLAPTRELA 567
P I LV+ PTRELA
Sbjct: 455 RQPPIIVLVVCPTRELA 471
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHINNQP 508
+TG+GKT+A++LPAI + P
Sbjct: 427 KTGTGKTVAFLLPAIEAVIKSP 448
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.9 bits (74), Expect = 0.092
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
FE+ + +G+ G+++P+PIQ + PIA++G +++ G + C
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 181
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
+ A++L PTRELA
Sbjct: 182 VLEKIDPNNNVIQAMILVPTRELA 205
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.9 bits (74), Expect = 0.092
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
FE+ + +G+ G+++P+PIQ + PIA++G +++ G + C
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 181
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
+ A++L PTRELA
Sbjct: 182 VLEKIDPNNNVIQAMILVPTRELA 205
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 33.9 bits (74), Expect = 0.092
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHCAH 495
FE+ + +G+ G+++P+PIQ + PIA++G +++ G + C
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 211
Query: 496 K*PTAIRRGDGPIALVLAPTRELA 567
+ A++L PTRELA
Sbjct: 212 TLEKIDPENNVIQAVILVPTRELA 235
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 33.1 bits (72), Expect = 0.16
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 349 QGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPNGFRQNVGLHLAS--HCAHK*PTAIRR 519
+ +K GY+ T +Q PI + GK+ L G + V L S PT+
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 520 GDGPI-ALVLAPTRELA 567
PI ALV+ PTRELA
Sbjct: 127 KRPPILALVICPTRELA 143
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 434 LAYQTGSGKTLAYILPAIVHINNQPLFG 517
+A Q+GSGKTLAY++P I + + L G
Sbjct: 416 IADQSGSGKTLAYLVPVIQRLREEELQG 443
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 31.9 bits (69), Expect = 0.37
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = +1
Query: 250 RRYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 429
++ K ++ V VEV NP + +++ +K G + PIQA + + + G +
Sbjct: 77 KKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGAD 135
Query: 430 LVG-VPNGFRQNVGLHL-ASHCAHK*PTAIRR----GDGPIALVLAPTRELA 567
LVG G + + L P +R G P LVL PTRELA
Sbjct: 136 LVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA 187
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 443 QTGSGKTLAYILPAIVHINNQP 508
+TG GKTLA++LP + + N P
Sbjct: 141 RTGQGKTLAFVLPILESLVNGP 162
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 31.9 bits (69), Expect = 0.37
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +1
Query: 343 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG---VPNGFRQNVGLHLASHCAHK*PTAI 513
+ + + + G ++ PIQ AM G++++G G G+ + K
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII-KYNAKH 173
Query: 514 RRGDGPIALVLAPTRELA 567
RG P+ LVLAPTRELA
Sbjct: 174 GRGRNPLCLVLAPTRELA 191
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 31.1 bits (67), Expect = 0.65
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 343 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG---VPNGFRQNVGLHLASHCAHK*PTAI 513
+ + +K G ++ PIQ AM G++++G G G+ + K
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII-KFNAKH 185
Query: 514 RRGDGPIALVLAPTRELA 567
RG P LVLAPTRELA
Sbjct: 186 GRGKNPQCLVLAPTRELA 203
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 31.1 bits (67), Expect = 0.65
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-NGFRQNVGLHL-ASHC 489
F+ + + +K MG++ T IQA + GK+++G G + + + A
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVEL 150
Query: 490 AHK*PTAIRRGDGPIALVLAPTRELA 567
K + R G G +V+ PTRELA
Sbjct: 151 LFKERFSPRNGTG--VIVICPTRELA 174
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +2
Query: 437 AYQTGSGKTLAYILPAI 487
A +TGSGKTLA+++PA+
Sbjct: 132 AARTGSGKTLAFLIPAV 148
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 125 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 9
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 434 LAYQTGSGKTLAYILPAIVHINNQPLFGEVMVR 532
+A +TGSGKT Y+ P I + N L EV R
Sbjct: 122 VAAETGSGKTHGYLAPIIDQLTNTALDSEVTNR 154
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 413 LCLERI*LAYQTGSGKTLAYILPAIVHINNQ 505
LC I A +TGSGKTLA+++P + ++ +
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 434 LAYQTGSGKTLAYILPAI 487
L TGSGKTLAY+LP +
Sbjct: 154 LGSHTGSGKTLAYLLPIV 171
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 29.5 bits (63), Expect = 2.0
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = +1
Query: 271 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMSG--KNLVGV 441
+ SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L+
Sbjct: 78 KAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQ 137
Query: 442 PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 567
+ + + PT +R P AL + PTRELA
Sbjct: 138 AHNGSGKTTCFVLGMLSRVDPT-LRE---PQALCICPTRELA 175
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 316 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 435
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 446 TGSGKTLAYILPAIVHI 496
TGSGKTLAY+LP + I
Sbjct: 156 TGSGKTLAYLLPILSEI 172
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +2
Query: 443 QTGSGKTLAYILPAI 487
+TGSGKTLAY+LP +
Sbjct: 91 KTGSGKTLAYLLPLL 105
Score = 27.9 bits (59), Expect = 6.1
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = +1
Query: 259 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 438
RN E E P + FEE + + + G ++PT IQ P + GK++V
Sbjct: 30 RNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVA 88
Query: 439 -VPNGFRQNVGLHL-ASHCAHK*PTAIRRGDGPIALVLAPTREL 564
G + + L + ++ P A +L P+REL
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSREL 132
>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 227
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 355 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVPNGFRQNVGLHLASHC 489
+K P P+ ++ + + P G+R+NVG+ L S C
Sbjct: 30 LKQFSVSSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPC 74
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 446 TGSGKTLAYILPAIVHINNQPL 511
TGSGKTL+Y LP + + ++P+
Sbjct: 71 TGSGKTLSYALPIVQLLASRPV 92
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +1
Query: 397 QGWPIAMSGKNLVG---VPNGFRQNVGLHLASHCA---HK*PTAIRRGDGPIALVLAPTR 558
Q P A++GK+L+ +G + + + S C + P+ RR P+A+VLAPTR
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN--PLAMVLAPTR 59
Query: 559 EL 564
EL
Sbjct: 60 EL 61
>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catalytic
subunit, putative similar to SP|O48653 DNA polymerase
alpha catalytic subunit (EC 2.7.7.7) {Oryza sativa};
contains Pfam profiles: PF03175 DNA polymerase type B,
organellar and viral, PF00136 DNA polymerase family B,
PF03104 DNA polymerase family B, exonuclease domain
Length = 1492
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 486 LCT*ITNRYSER*WSDCFGLGAYQRVSTTNSAVAADLDTHLMFVT 620
LC I ER ++C GL + S +N A ++D T L+F T
Sbjct: 1274 LCAEIQGTSPER-LAECLGLDPSKYRSKSNDATSSDPSTSLLFAT 1317
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 6 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 152
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 27.5 bits (58), Expect = 8.0
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Frame = +1
Query: 328 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG---VPNGFRQNVGLHLASHCAHK 498
+ P +++ ++ G PIQ A+ G++++ G G+ + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 499 *P--TAIRR-GDGPIALVLAPTRELA 567
TA RR G P LVLAPTRELA
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELA 193
>At3g58200.1 68416.m06489 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 319
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -1
Query: 465 NVLPEPVWYAN*ILSRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMN 295
+VLP V + + + R+ ++ ++ T C+Y LL +I +C K L + N
Sbjct: 183 HVLPSQVEFVSRVFERYPEIASIFQAKKQHLRTACMYVLLSLIETLC--KSLEELSN 237
>At3g42725.1 68416.m04461 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 72 LGLATVAIDLEDLEALVGKKNSLEGRTCDAQIGILFHSNLSTKTFMIHILQFSKD 236
LGLA +A+ L L + G +S + R+C I H + T F+ ++ FS++
Sbjct: 44 LGLAFLAVSLVSLISSFGSASSHQSRSCFI-ARITLHVSSLTGQFIAVLMLFSRE 97
>At1g13810.1 68414.m01621 expressed protein ; expression supported
by MPSS
Length = 303
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 220 RMWIIKVFVERLE*NRIPIWASHVLPSREFF 128
R+W F E ++ W +HVLP+RE +
Sbjct: 222 RVWRDTAFWEDMKPALFDFWQNHVLPAREIY 252
>At1g07560.1 68414.m00809 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 856
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -3
Query: 496 YVHNGWQDVGQRFAGTRLVRQLNSFQT*LSASLELEWASVLCNPLSLH 353
Y+ NG D+ + F+G+ ++ ++ + A+ LE+ + C PL +H
Sbjct: 630 YMVNG--DLKKHFSGSSIISWVDRLNIAVDAASGLEYLHIGCKPLIVH 675
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,718
Number of Sequences: 28952
Number of extensions: 299225
Number of successful extensions: 860
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -