Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20321
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.7  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   8.2  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   8.2  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   8.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 539 AQG*NINGLTRTVPARPILVESSRGP 462
           A G ++NGLT  VP+  +   SS GP
Sbjct: 65  ASGSSLNGLTNNVPSNGL---SSSGP 87


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 364 VFCHCSDRASL 332
           VFC CS +ASL
Sbjct: 298 VFCDCSHQASL 308


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 364 VFCHCSDRASL 332
           VFC CS +ASL
Sbjct: 298 VFCDCSHQASL 308


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 364 VFCHCSDRASL 332
           VFC CS +ASL
Sbjct: 298 VFCDCSHQASL 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,121
Number of Sequences: 336
Number of extensions: 3877
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)