Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20321
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 150 2e-37
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 150 2e-37
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 39 7e-04
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.73
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 2.9
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 27 3.9
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 6.8
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 150 bits (364), Expect = 2e-37
Identities = 85/154 (55%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Frame = +1
Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQ 435
H+AGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQ
Sbjct: 50 HTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQ 109
Query: 436 VLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQ 615
VLV A+ GPREDSTRIG AGTV + + P + +K
Sbjct: 110 VLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSIS 169
Query: 616 SVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
L + +G + IKKKDELERVAKSNR
Sbjct: 170 ECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 98 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISV 229
A S++ + +SL + IKLF ++ V+V D+SL DYI++
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITI 42
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 150 bits (364), Expect = 2e-37
Identities = 85/154 (55%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Frame = +1
Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQ 435
H+AGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQ
Sbjct: 50 HTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQ 109
Query: 436 VLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQ 615
VLV A+ GPREDSTRIG AGTV + + P + +K
Sbjct: 110 VLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSIS 169
Query: 616 SVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
L + +G + IKKKDELERVAKSNR
Sbjct: 170 ECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
Score = 28.7 bits (61), Expect = 0.96
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 119 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISV 229
T SL + E IKLF ++ V+V D+SL DYI++
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITI 42
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 39.1 bits (87), Expect = 7e-04
Identities = 39/137 (28%), Positives = 57/137 (41%)
Frame = +1
Query: 310 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 489
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSA 181
Query: 490 GRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQMN*LMQLRGHLTLR 669
R + P+ P E ++ + S K+ + + ++ +R +
Sbjct: 182 KRFNKSVEFPM---PLKERQRRRIALQWILGECKSSSPKRLSDRI-VKEIIAIRSKTSNC 237
Query: 670 IKKKDELERVAKSNR*N 720
KKKD L R+ NR N
Sbjct: 238 FKKKDHLHRMCLVNRGN 254
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.73
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 369 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 467
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +1
Query: 409 LLTGENPLQVLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRL 588
LL+G+N ++ +T N G + DS+ + T V+ L + P ++ S C R+
Sbjct: 261 LLSGDNANEIFLTKYSNGGWQTDSSPF-LSHTAAVEDLQWSPSEKNVFSSCSCDGT-FRI 318
Query: 589 HSEILKQSQSVLQMN 633
KQ S L +N
Sbjct: 319 WDVRNKQKTSALTVN 333
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +3
Query: 438 TRDCHYQLWTP*RFD*DRSCGYSSRQAVDVSPLRRVNQAI----WLLCTGA 578
TR +LW P + RS + + PL+R N +I WL+C GA
Sbjct: 157 TRAFGMRLWKPALYKKFRSINRDADIDIHDEPLKRPNTSISNVIWLICFGA 207
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 318 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 440
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,276
Number of Sequences: 5004
Number of extensions: 63407
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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