Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20321
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 165 5e-41
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 164 8e-41
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 30 2.3
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 29 3.1
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.4
03_06_0610 + 35052455-35053429,35054936-35055511 29 5.4
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 28 7.1
07_03_1790 - 29536497-29536625,29536734-29536848,29537357-295375... 28 7.1
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 165 bits (400), Expect = 5e-41
Identities = 90/155 (58%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
Frame = +1
Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQ 435
H+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+Q
Sbjct: 46 HTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQ 105
Query: 436 VLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHS-EILKQS 612
V+V AIINSGPRED+TRIG AG V + + P Q+ + R + +K
Sbjct: 106 VIVDAIINSGPREDATRIGSAGAVRRQAVDISP-LRRVNQAIYLLTTGARESAFRNIKTI 164
Query: 613 QSVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
L + +G + IKKKDE+ERVAK+NR
Sbjct: 165 AECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYL 253
E+KLF RWS DVQV+D+SL DY++V K+A YL
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYL 44
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 164 bits (398), Expect = 8e-41
Identities = 89/155 (57%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
Frame = +1
Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQ 435
H+AGRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+Q
Sbjct: 47 HTAGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQ 106
Query: 436 VLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHS-EILKQS 612
V+V AIINSGPRED+TRIG AG V + + P Q+ + R + +K
Sbjct: 107 VIVDAIINSGPREDATRIGSAGAVRRQAVDISP-LRRVNQAIYLLTTGARESAFRNIKTI 165
Query: 613 QSVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
L + +G + IKKKDE+ERVAK+NR
Sbjct: 166 AECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +2
Query: 155 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYL 253
+KLF WS DVQV+D+SL DY++V K+A YL
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYL 45
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 83 DDVAEAGSVVVETMSLPQAAD-IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLLI 259
DD + ++ E + + D I E +L W D V+ L+D I KE + +++
Sbjct: 197 DDPPQLSKLIPENSPVGKPQDEIAEERLEDNWVPPDETVAPEELEDTIRSKEAHTNAVIL 256
Query: 260 QLAGMHTSVSVKP 298
Q G +KP
Sbjct: 257 QSLGDIPDAEIKP 269
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 510 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 665
R+AV + +RR+ A WL GAR A R A E++ +A G S
Sbjct: 10 REAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 87 T*PRQAAWLWKPCLYHKPPTF 149
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 205 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 38
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 37 *K 32
K
Sbjct: 476 AK 477
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 173 WSCYDVQVSDMSLQDYISVKEKYAKYLLIQLAGM-HTSVSVKPSAQSWSALQTL 331
W C + + +SLQ+++ + +Y + L+G+ H + V + L+TL
Sbjct: 134 WKCLKFENTRISLQNFVDICHRYQNVTYLNLSGVPHAELLVMEAITCLRHLKTL 187
>07_03_1790 -
29536497-29536625,29536734-29536848,29537357-29537508,
29537589-29537737,29538936-29539098,29539575-29539686,
29539791-29540152
Length = 393
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 194 VSDMSLQDYISVKEKYAKYLLIQLAGMHTSVSVKPSAQSW 313
VSD Y+ + EK+A LL ++ +V KP+ ++W
Sbjct: 186 VSDHEADGYLKIVEKHASGLLPEMRKDDYAVVEKPTLETW 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,018,981
Number of Sequences: 37544
Number of extensions: 415021
Number of successful extensions: 1003
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -