Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20321
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               178   3e-45
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           30   2.3  
SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)              29   4.1  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.1  
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)                   28   9.5  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     28   9.5  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  178 bits (434), Expect = 3e-45
 Identities = 95/154 (61%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
 Frame = +1

Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQ 435
           H+AGRYA KRFRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQ
Sbjct: 119 HTAGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQ 178

Query: 436 VLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQ 615
           VLV AIINSGPREDSTRIGRAGTV  + +   P     +                +K   
Sbjct: 179 VLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSIA 238

Query: 616 SVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
             L    +   +G   +  IKKKDELERVAKSNR
Sbjct: 239 ECLADELINAAKGSSNSYAIKKKDELERVAKSNR 272



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 29/49 (59%), Positives = 38/49 (77%)
 Frame = +2

Query: 107 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 253
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YL
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYL 117



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +2

Query: 107 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 211
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = -2

Query: 710 LDLATRSSSSFFLMRRVR*PLSCIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDSA 537
           LD + R SSS    RR      C     C   C C   + C   CTC Q   C+V SA
Sbjct: 202 LDSSPRRSSSKPGPRRA----DCYVNLCCCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
          Length = 603

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 327 VCKALHDWALGFTETLVCIPAS*MSKYFAYFSLTEM*SCRDISETC 190
           VC+  H+W +G    L+  P    +K F  FS T+M SC  ++  C
Sbjct: 307 VCRNRHNWDIG-ASMLLRYPLDQSNKSF--FSWTDMASCDQLATAC 349


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 644  CIN*FICNTLCDCFNISECSLTCTC 570
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
          Length = 553

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 15  TVRGYNFYLVIEKYQSWPR--RTGMTT*PR 98
           +V G NF++V++ +  WP    T  TT P+
Sbjct: 242 SVHGVNFFVVVDAHSKWPEIIATSSTTAPK 271


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 170 RWSCYDVQVSDMSLQDYISVKEKYAKYLLIQLAGMHTSVSVKPSAQ 307
           RWSC   Q  + +++ Y+  KE  ++ L  +     +SV+  PS +
Sbjct: 59  RWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIPSKE 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,704,377
Number of Sequences: 59808
Number of extensions: 504368
Number of successful extensions: 1328
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)