Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20321
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   169   1e-42
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical...    28   8.4  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  169 bits (412), Expect = 1e-42
 Identities = 93/158 (58%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
 Frame = +1

Query: 244 KIFTHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 423
           K   HSAGR+  +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGE
Sbjct: 53  KYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGE 112

Query: 424 NPLQVLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHSEIL 603
           NP+QVLV A+INSGPREDSTRIGRAGTV  + +   P     +                +
Sbjct: 113 NPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNV 172

Query: 604 KQSQSVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
           K     L    +   +G   +  IKKKDELERVAKSNR
Sbjct: 173 KTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = +2

Query: 137 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 253
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYL
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYL 55


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 460 SGPREDSTRIGRAGTVL-VKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 627
           S P + S + G + TVL +    +     S  QSGF    HV++  EIL+Q+  V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTYIRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205


>AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical
           protein T24C4.7 protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +1

Query: 454 INSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQV----HVRLHSEILKQSQSV 621
           I S  + D T +G       + L+F  C  + + S FC ++    H R HS   +  +S 
Sbjct: 562 IESSQKYDLTAMGDIARESSRCLLFRNCLCTNQMSRFCCKLVGREHCRFHSVYPENDESY 621

Query: 622 LQMN 633
            +M+
Sbjct: 622 AKMD 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,378,753
Number of Sequences: 27780
Number of extensions: 368616
Number of successful extensions: 960
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)