Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20321
(765 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 2.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 5.4
M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee homeobox-... 22 5.4
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 22 5.4
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 22 5.4
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 22 5.4
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 22 5.4
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 22 5.4
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 5.4
AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein. 22 5.4
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 22 7.2
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 9.5
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 9.5
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 9.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 9.5
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 9.5
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/28 (32%), Positives = 10/28 (35%)
Frame = -2
Query: 626 CNTLCDCFNISECSLTCTCAQKPDCLVD 543
C LC C + C TC C D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +2
Query: 239 YAKYLLIQLAGMHTSVSVKPSAQSWSAL 322
+ YL+I +G+ V + P W +L
Sbjct: 291 WTPYLVINFSGIFNLVKISPLFTIWGSL 318
>M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H17. ).
Length = 79
Score = 22.2 bits (45), Expect = 5.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 127 FTTSRRHS*NQAFRQMELLRCASL*YVSAGLHFR*REVRKIFTHSAGRYAHKRFRKAQ 300
FTT + S + FR+ + L A S+ LH +V+ F + R KR ++A+
Sbjct: 16 FTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNR--RAKAKRLQEAE 71
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 22.2 bits (45), Expect = 5.4
Identities = 23/94 (24%), Positives = 39/94 (41%)
Frame = +2
Query: 41 SNRKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDY 220
S+R V + AE+ V + S +++T+ A + + + + + LQD
Sbjct: 345 SDRVVALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQD- 403
Query: 221 ISVKEKYAKYLLIQLAGMHTSVSVKPSAQSWSAL 322
E+Y Y L +LA VK SW+ L
Sbjct: 404 -KYYEEYKMYELGELASSFVGPKVKDCLISWNPL 436
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 280 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 381
+R R + I+ L+N + + NN KKL I
Sbjct: 72 ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 280 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 381
+R R + I+ L+N + + NN KKL I
Sbjct: 72 ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 22.2 bits (45), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 280 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 381
+R R + I+ L+N + + NN KKL I
Sbjct: 72 ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 280 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 381
+R R + I+ L+N + + NN KKL I
Sbjct: 72 ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.2 bits (45), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 280 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 381
+R R + I+ L+N + + NN KKL I
Sbjct: 305 ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338
>AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein.
Length = 76
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +2
Query: 239 YAKYLLIQLAGMHTSVSVKPSAQSWSAL 322
+ YL+I +G+ V + P W +L
Sbjct: 41 WTPYLVINFSGIFNLVKISPLFTIWGSL 68
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 21.8 bits (44), Expect = 7.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 209 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 114
+ Y+RL H N I ++ F RL T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 9.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +1
Query: 379 IVKHAFEIIHLLTGENPLQVLVTAII 456
+++HAFEI +L P+ +++ I
Sbjct: 217 LIEHAFEISTMLFFVLPMTIIIVLYI 242
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 9.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Frame = -2
Query: 347 RPCIIREFVRRSTIGHWAL 291
+ +++E +R+ GHW +
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 9.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Frame = -2
Query: 347 RPCIIREFVRRSTIGHWAL 291
+ +++E +R+ GHW +
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 9.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Frame = -2
Query: 347 RPCIIREFVRRSTIGHWAL 291
+ +++E +R+ GHW +
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.4 bits (43), Expect = 9.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 329 EFVRRSTIGHWALRKRLCAYLPAE 258
EF R T AL K+LC PAE
Sbjct: 585 EFPRSITRNATALIKKLCRDNPAE 608
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,970
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 21
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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