Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20321
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 163 2e-40
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 163 2e-40
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 163 2e-40
At2g05790.1 68415.m00623 glycosyl hydrolase family 17 protein si... 31 1.1
At4g39450.1 68417.m05582 expressed protein 29 4.5
At3g19780.1 68416.m02504 expressed protein 28 7.8
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 163 bits (395), Expect = 2e-40
Identities = 89/155 (57%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
Frame = +1
Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQ 435
H+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+Q
Sbjct: 54 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQ 113
Query: 436 VLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHS-EILKQS 612
V++ AI+NSGPRED+TRIG AG V + + P Q+ F R + +K
Sbjct: 114 VIIDAIVNSGPREDATRIGSAGVVRRQAVDISP-LRRVNQAIFLITTGAREAAFRNIKTI 172
Query: 613 QSVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
L + +G + IKKKDE+ERVAK+NR
Sbjct: 173 AECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYL 253
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFV 52
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 163 bits (395), Expect = 2e-40
Identities = 89/155 (57%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
Frame = +1
Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQ 435
H+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+Q
Sbjct: 54 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQ 113
Query: 436 VLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHS-EILKQS 612
V++ AI+NSGPRED+TRIG AG V + + P Q+ F R + +K
Sbjct: 114 VIIDAIVNSGPREDATRIGSAGVVRRQAVDISP-LRRVNQAIFLITTGAREAAFRNIKTI 172
Query: 613 QSVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
L + +G + IKKKDE+ERVAK+NR
Sbjct: 173 AECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYL 253
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFV 52
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 163 bits (395), Expect = 2e-40
Identities = 89/155 (57%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
Frame = +1
Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQ 435
H+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+Q
Sbjct: 54 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQ 113
Query: 436 VLVTAIINSGPREDSTRIGRAGTVLVKPLMFHPCAESTKQSGFCAQVHVRLHS-EILKQS 612
V++ AI+NSGPRED+TRIG AG V + + P Q+ F R + +K
Sbjct: 114 VIIDAIVNSGPREDATRIGSAGVVRRQAVDISP-LRRVNQAIFLLTTGAREAAFRNIKTI 172
Query: 613 QSVLQMN*LMQLRGHL-TLRIKKKDELERVAKSNR 714
L + +G + IKKKDE+ERVAK+NR
Sbjct: 173 AECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYL 253
E+KLF RWS DV V+D+SL DYI V+ K+A ++
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFV 52
>At2g05790.1 68415.m00623 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 472
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 573 GAREAAFRNIKTIAECVADELINA-AKGSSNSTHQKEGRAGACC*IQPLKYTIS 731
G A R I+ A C + + + A A + NS +QK+GRAG C Y +S
Sbjct: 405 GEGGADCRPIQPGANCYSPDTLEAHASFAFNSYYQKKGRAGGSCYFGGAAYVVS 458
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +3
Query: 522 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 665
DVSPL + IWL T ARE + + I +A E I AA S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455
>At3g19780.1 68416.m02504 expressed protein
Length = 1014
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 194 VSDMSLQDYISVKEKYAKYLLIQLAGMHTSVSVKPSAQSWSALQT 328
+ D +LQ + +++K++ L+ + + S+ P AQS S++QT
Sbjct: 612 IIDPALQQHYVLQDKFSYSSLVDFLDGYLNGSLSPYAQSESSIQT 656
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,813
Number of Sequences: 28952
Number of extensions: 335466
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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