Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20318
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.43 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.56 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.0  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.2  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 292 GSGYLFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISC 158
           GS Y+   VP    RVLL+ TD   +    S D  E+G     +C
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 260 SPHKSPSVPYRPSRPDGGAFPRSRG 186
           SPH+SP  P R S P+    P   G
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGG 50


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 373  LRVAPEEHPVLLTEAPLNPKTNREKM 450
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 202 KAPPSGRDGRYGTEGLL*GDEAQSKRGILTLKYPIEHGIVTNWDD 336
           K  P G  G  G + +L   E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 202 KAPPSGRDGRYGTEGLL*GDEAQSKRGILTLKYPIEHGIVTNWDD 336
           K  P G  G  G + +L   E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 346 SSPCHPS**RFRVRWGI*GSGYLFCSVPHLLIRVLLSH 233
           +SP H S  +  +  G+    +L C VP   + ++ S+
Sbjct: 260 TSPYHVSDHKAAITVGVIMGVFLICWVPFFCVNIVTSY 297


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 470 HSTRPPCTSPSKPALA 517
           H T PP  SPS  A A
Sbjct: 674 HLTSPPARSPSSQAQA 689


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 137 GMCKAGFAGD 166
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 196 DRGEHGARSIISCETGLA 143
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 196 DRGEHGARSIISCETGLA 143
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,069
Number of Sequences: 438
Number of extensions: 4438
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)