Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20314
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)        33   0.33 
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                31   0.99 
SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_58608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_42090| Best HMM Match : Ldl_recept_a (HMM E-Value=0.54)             28   9.2  
SB_13190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)
          Length = 229

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
 Frame = +2

Query: 32  LIVCGVFLKQLNSKIT-----RFNVFISTSHL-----FV*FYREVSPVIWFKRHFATLQE 181
           + V GVF  + +S ++      F +  ST +L     FV  Y  V  VI+    FATL  
Sbjct: 94  IAVLGVFESESSSGVSGKSQMMFALVFSTRYLDLFTSFVSLYNSVMKVIYISCAFATLYL 153

Query: 182 SHLKFKKIGKKNHD 223
            ++KFK     NHD
Sbjct: 154 MYIKFKATYDSNHD 167


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -1

Query: 458 HAHHEKSAHLSHAV*LMSVKGTVNVLFLLIFINIAWSCFIIIIVLIL 318
           H HH++  H  H +  + V   VN++ ++I I I  +  II+I +I+
Sbjct: 65  HHHHQQHHHHHHHIINIIVIIIVNIIIIIIIIIIIINIIIIVINIII 111


>SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -1

Query: 410 MSVKGTVNVLFLLIFINIAWSCFIIIIVLILNYYCLIII 294
           ++V  TV V+ ++I I I  +  IIII++I+    +III
Sbjct: 86  VTVTVTVTVIIIIIIIIIIITIIIIIIIIIIIIIIIIII 124


>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -1

Query: 494 CL*ISVRRDVTLHAHHEKSAHLSHAV*LMSVKGTVNVLFLLIFINIAWSCFIIIIVLILN 315
           C  +S +     H HH    H+   + ++ +   +N++ ++I I I     III  +I+ 
Sbjct: 187 CYSVSFQNSNRYHHHHHH--HIIIIINIIIIIIIINIIIIIIIIIIIIIIIIIITTIIII 244

Query: 314 YYCLIII 294
              +III
Sbjct: 245 IIIIIII 251


>SB_58608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 386 VLFLLIFINIAWSCFIIIIVLILNYYCLIII 294
           ++ ++I INI     IIII++I+  + +III
Sbjct: 7   IIVIVIIINIIIKIIIIIIIIIIIIFIIIII 37


>SB_42090| Best HMM Match : Ldl_recept_a (HMM E-Value=0.54)
          Length = 282

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 580 NSVTKKTLHSSLRLPCSPRSTHSHLRLCSV--YE*ACGVTSHCMRTMKSLPISLTRS 416
           NS+TK +     +  C  + +     L SV  +E +C +  HCM    SL +S TRS
Sbjct: 116 NSITKNSWRDR-KPDCVCKGSTERFPLLSVTLFELSCSINGHCM-LFASLLLSTTRS 170


>SB_13190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 525 RGLHGRRSEECKVFFVTEFHDSALKPRSRPAIKT 626
           RG HG R  EC V  +++ + +A      P I T
Sbjct: 196 RGTHGLRRHECAVVLLSQINMAANSTEKTPLINT 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,675,996
Number of Sequences: 59808
Number of extensions: 353195
Number of successful extensions: 1166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)