Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20314
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53325.1 68414.m06044 F-box family protein-related contains w...    30   1.9  
At3g24880.1 68416.m03120 expressed protein                             28   5.7  

>At1g53325.1 68414.m06044 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to suppressor of nim1-1 (GI:22023774)
           [Arabidopsis thaliana]
          Length = 168

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 571 TKKTLHSSLRLPCSPRSTHSHLRLCSVYE-*ACGVTSHCMRTMKSLPISLTRSSL 410
           +K+TL     LPC  + + +H R+ S+Y+     V   C RT + + I +T++ +
Sbjct: 24  SKETLKMFCILPCKAKKSTTHTRILSIYKGDRFSVMEQCKRT-REIEIWVTKNKI 77


>At3g24880.1 68416.m03120 expressed protein
          Length = 1957

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 170  TLQESHLKFKKIGKKNHDRKTRVTLGDCPVKLLHSI 277
            TL+    K   IGKK H RKT+  +G   V  +H I
Sbjct: 1150 TLKSHFEKICLIGKKLHYRKTQSVIGVSVVSFVHGI 1185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,927
Number of Sequences: 28952
Number of extensions: 235873
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)