Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20311
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.99
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 30 1.7
10_08_0520 - 18495118-18498237 30 2.3
12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316... 29 3.0
11_01_0651 - 5272442-5272718,5274026-5274081 29 3.0
04_03_0398 - 15393102-15393378,15394685-15394740 29 3.0
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 3.0
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 29 4.0
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 5.3
01_01_0100 - 755894-756662,757086-757598,758718-761050 29 5.3
09_04_0086 + 14445665-14446683,14448669-14448915 28 7.0
09_04_0085 + 14441123-14443507,14443731-14443787 28 7.0
08_02_0003 + 11180421-11180757,11180773-11185715 28 7.0
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 28 7.0
07_01_0376 + 2815419-2815755,2815912-2817659 28 7.0
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 7.0
04_01_0327 + 4325225-4327486 28 7.0
02_02_0233 + 8105765-8107840 28 7.0
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.99
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 283 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 372
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/93 (23%), Positives = 46/93 (49%)
Frame = +2
Query: 59 VPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKS 238
+ A+ K L++ + S EQEL +++ D+ L+AN + + +K +EE+K +
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELKRQ-RD 728
Query: 239 DLENVECRMKMRKSRGL*SI*EIPGPRSIKSTK 337
+L+ +E + G + ++ RS+ K
Sbjct: 729 NLKTLEANLDQTVRDGAKDLEQLMSSRSMHLAK 761
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 391 NDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQLSKKI 522
+D+N + + LR+G + + D + W A E NE A L L + +
Sbjct: 476 SDLNKSRV-LRKGLEHIPDSVRLWKAVVELANEEDARLLLHRAV 518
>12_02_0772 -
23029703-23029715,23029835-23030463,23030637-23031673,
23031830-23032166
Length = 671
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 56 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 187
++ +DK L+ +D + E ID+ I ++D L +K+ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQKDTL 53
>11_01_0651 - 5272442-5272718,5274026-5274081
Length = 110
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +2
Query: 377 FLPSKMTLTQRKSLFVKASRKCQTVLENGTLVP-----SKLTSSRPA--CNFPRKFRRSD 535
+L TLT +S + + SR C L GT P S L S+PA PR+ RR D
Sbjct: 19 WLNMSSTLTASQSAWTRGSRNCHRPLVTGTARPLHGARSPLRRSKPAVQAGRPRRRRRLD 78
>04_03_0398 - 15393102-15393378,15394685-15394740
Length = 110
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +2
Query: 377 FLPSKMTLTQRKSLFVKASRKCQTVLENGTLVP-----SKLTSSRPA--CNFPRKFRRSD 535
+L TLT +S + + SR C L GT P S L S+PA PR+ RR D
Sbjct: 19 WLNMSSTLTASQSAWTRGSRNCHRPLVTGTARPLHGARSPLRRSKPAVQAGRPRRRRRLD 78
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 322 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 486
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 295 DLRNPGPPQHQEH-ETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYAR 471
D+ P P++ ++ E +PE+++D E S+ + I T + ++QG Q + + I
Sbjct: 408 DVNVPSSPENFKYPEASSPENYKDPEAHQSANFDAIMTQLMQIQQGCQFLDNKIS----- 462
Query: 472 TEQINELQASLQLSKKISALRYK 540
T+ I+ +Q + I A++Y+
Sbjct: 463 TKLISIENTCIQNRRDIQAIKYR 485
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +2
Query: 56 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 187
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +2
Query: 56 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 187
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>09_04_0086 + 14445665-14446683,14448669-14448915
Length = 421
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 56 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 187
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 351 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 394
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 56 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 187
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 56 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 187
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 56 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 187
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>07_01_0376 + 2815419-2815755,2815912-2817659
Length = 694
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 56 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 187
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 349 EHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTE-QINELQASLQ----LS 513
+H + E VSS+K + EI + ++VS +W A E ++EL+A Q L
Sbjct: 1679 QHVAELEVQVSSLKQQLQETEIHYKHKEEQVSLREVQWEADQEHSVSELKAQRQYAAELE 1738
Query: 514 KKISAL 531
K+I AL
Sbjct: 1739 KQIGAL 1744
>04_01_0327 + 4325225-4327486
Length = 753
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 107 SEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVECRMKMRKSRG 286
S + +I + N K + + KE+ D KV+ +E +L D+ +E + +RK RG
Sbjct: 423 SNETMIPE-NVKKLVSELVSRQLKELRDYVKKVVAQEGADALSQDVNLLEMAVYLRKKRG 481
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 349 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 480
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,709,395
Number of Sequences: 37544
Number of extensions: 335884
Number of successful extensions: 1220
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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