Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20311
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-14|AAC46763.1| 194|Caenorhabditis elegans Hypothetical p... 30 1.5
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical pr... 29 2.7
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 2.7
AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical ... 29 2.7
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 2.7
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical ... 28 6.2
Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical p... 28 8.2
>U23484-14|AAC46763.1| 194|Caenorhabditis elegans Hypothetical
protein EEED8.3 protein.
Length = 194
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/112 (19%), Positives = 54/112 (48%)
Frame = +2
Query: 53 DKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSL 232
+ V E + + + DN + Q + + NT+K++ ++ +N+K+ + P++++ I
Sbjct: 17 EMVEEEKFEKIENTDNSENFQYVSTKGNTVKEV--NINSNEKKKKEAPIQILTAMIGKWK 74
Query: 233 KSDLENVECRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKSFLPS 388
+ EN++ + K + + G K +++ T +L KS +P+
Sbjct: 75 LASSENLQEYFTLEKFPEITQMAWEHGITCYKMNGNQLHVHTDLLGKSLIPT 126
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 35 RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD-IDNSLRANKKEVIDIPVKVIV 211
RA P+K ED+ +++ S + +L Q TI++ +D+ +R K + D+ K ++
Sbjct: 621 RAGVYPEKQKAQEDESQQEMEDTSIDPQLERQVETIRNLVDSYMRIITKTIKDLVPKAVM 680
Query: 212 EEI 220
I
Sbjct: 681 HLI 683
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 35 RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD-IDNSLRANKKEVIDIPVKVIV 211
RA P+K ED+ +++ S + +L Q TI++ +D+ +R K + D+ K ++
Sbjct: 621 RAGVYPEKQKAQEDESQQEMEDTSIDPQLERQVETIRNLVDSYMRIITKTIKDLVPKAVM 680
Query: 212 EEI 220
I
Sbjct: 681 HLI 683
>Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 265 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 426
E +RP V + P PP Q + N +H + +V+ K+ ++ E ALR+
Sbjct: 373 EQARYQRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 35 RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD-IDNSLRANKKEVIDIPVKVIV 211
RA P+K ED+ +++ S + +L Q TI++ +D+ +R K + D+ K ++
Sbjct: 621 RAGVYPEKQKAQEDESQQEMEDTSIDPQLERQVETIRNLVDSYMRIITKTIKDLVPKAVM 680
Query: 212 EEI 220
I
Sbjct: 681 HLI 683
>AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 265 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 426
E +RP V + P PP Q + N +H + +V+ K+ ++ E ALR+
Sbjct: 373 EQARYQRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 35 RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD-IDNSLRANKKEVIDIPVKVIV 211
RA P+K ED+ +++ S + +L Q TI++ +D+ +R K + D+ K ++
Sbjct: 621 RAGVYPEKQKAQEDESQQEMEDTSIDPQLERQVETIRNLVDSYMRIITKTIKDLVPKAVM 680
Query: 212 EEI 220
I
Sbjct: 681 HLI 683
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 310 GPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINE 489
GPP HQ+H Q +H+ A SS N + Q Q+ GI + +Q +
Sbjct: 133 GPPVHQQHYQQQQQHYGAATSAPSSSYN-------VMYQ--QQEDTGIDAFAQFGQQSQQ 183
Query: 490 LQASLQLSKKISA 528
S +LS++I+A
Sbjct: 184 YHPSPELSEQINA 196
>Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical
protein F09C8.2 protein.
Length = 762
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 265 ENEEIKRPLVDLRNPGPPQHQEHETQNPE 351
EN+ + V+ + P P QHQ+ + Q PE
Sbjct: 404 ENQRYEGNFVEYQPPPPQQHQQQQPQAPE 432
>AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical
protein Y105C5A.1 protein.
Length = 767
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 582 IAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEG 698
+ PS + T+NK I+ + L +NFN+G+ +S G
Sbjct: 215 VVLPSRKSTRNKKDMNQIKED-EELVSNFNNGIGVISRG 252
>Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -2
Query: 243 KSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSAS 64
K LF + + + L+ ++T+ + LL S L + + + STT GL+ S
Sbjct: 261 KELFTERHLRMALILSVSALTNTVGLWALLLSSTFFLENANVESEIAEWSTTAMGLAYVS 320
Query: 63 GTLSG 49
GT++G
Sbjct: 321 GTITG 325
>Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -2
Query: 243 KSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSAS 64
K LF + + + L+ ++T+ + LL S L + + + STT GL+ S
Sbjct: 261 KELFTERHLRMALILSVSALTNTVGLWALLLSSTFFLENANVESEIAEWSTTAMGLAYVS 320
Query: 63 GTLSG 49
GT++G
Sbjct: 321 GTITG 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,318
Number of Sequences: 27780
Number of extensions: 300058
Number of successful extensions: 1305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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