Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20311
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   4.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 173 KKEVIDIPVKVIVEEIKPSLKSDLENVECRMKMRK 277
           KKE+ DI  +V VEEI    K  L+N + + K +K
Sbjct: 570 KKEIYDILPEVDVEEILGEAKV-LQNFDIKDKNKK 603


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 129 WSMSSCSLDKLSTTFKGLSSASGTLSG 49
           W+M+  + D+ +   KGLS    +++G
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSING 167


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 129 WSMSSCSLDKLSTTFKGLSSASGTLSG 49
           W+M+  + D+ +   KGLS    +++G
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 129 WSMSSCSLDKLSTTFKGLSSASGTLSG 49
           W+M+  + D+ +   KGLS    +++G
Sbjct: 17  WTMTMIAFDRYNVIVKGLSGKPLSING 43


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 71  EDKPLNVVDNLSSEQELIDQANTIKDIDNSL 163
           E  P+ +++NL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 673 AVLISYLKVFKLWLRSKPTERL 738
           AV +  L +  LWL S+ TER+
Sbjct: 263 AVTMMLLTLTVLWLDSRSTERM 284


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +1

Query: 664 ISIAVLISYLKVFKLWLRSKPTERL 738
           +++ +++  + +  LWL    TER+
Sbjct: 251 VTLTIVLMTMTLMTLWLEPSSTERM 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,264
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)