Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20311
(757 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 35 0.067
At3g61390.2 68416.m06872 U-box domain-containing protein several... 33 0.15
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 33 0.15
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 31 0.62
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.62
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.83
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 30 1.9
At3g05110.1 68416.m00555 hypothetical protein 29 2.5
At1g12380.1 68414.m01431 expressed protein 29 2.5
At2g40435.1 68415.m04988 expressed protein 29 3.3
At2g46180.1 68415.m05742 intracellular protein transport protein... 29 4.4
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 4.4
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 29 4.4
At5g35604.1 68418.m04242 hypothetical protein 28 5.8
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 28 7.7
At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt... 28 7.7
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 28 7.7
At3g14490.1 68416.m01835 terpene synthase/cyclase family protein... 28 7.7
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 530 SAEIFLESCKLA-WSSLICSVRAYHFPIPSDTSW 432
S+E + + C+ WS+ S R YHF IP DT W
Sbjct: 87 SSEPYCDHCRCTGWSNHFVSKRKYHFIIPIDTEW 120
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = +1
Query: 250 R*VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 426
R + +E EE+K L ++ G + +E T N H E + + + +DI
Sbjct: 317 RGIREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAAD 374
Query: 427 GFQEVSDGIGKWYARTEQINE-LQASLQLSKKISALRYKS*MKRYILLNQL 576
GF + I +W+ R + + + L + + L +S ++ ++ L +L
Sbjct: 375 GFTYEGEAISRWFERGHETSPMINKRLPHTSLVPNLALRSAIQEWLQLREL 425
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/96 (23%), Positives = 49/96 (51%)
Frame = +2
Query: 50 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 229
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 230 LKSDLENVECRMKMRKSRGL*SI*EIPGPRSIKSTK 337
LK + E ++ ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 74 DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENV 253
DK + D + +EL + N +K +L +E+ K + E K SLKSD+EN+
Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97
Query: 254 ECRMKMR 274
+ + R
Sbjct: 98 NLQYQQR 104
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 337 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 474
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 298 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 453
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 379 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQLSKKI 522
+ +++D+ LR+G + + D + W A E NE A + L + +
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDARILLHRAV 505
>At3g05110.1 68416.m00555 hypothetical protein
Length = 372
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 340 QNPEHHEDAEKIVSSVKNDINTAEIALRQG----FQEVSDGIGKWYARTEQINELQASLQ 507
+N E HE +V S ND + G + D + + Y R +++N+ Q+SLQ
Sbjct: 150 ENDEDHEPVMCVVDSEFNDFRKTMSSFMAGQVWALYDGIDSMPRCYGRIKKVNKCQSSLQ 209
Query: 508 LS 513
++
Sbjct: 210 VT 211
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 220 QTVVEE*FRKR*VPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 396
+ VVE F+K P I PL +R+ + +PE +D +K+++ + +
Sbjct: 586 EKVVERRFKKSYHPAWAAAFILDPLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR 645
Query: 397 INTAEIALRQGFQEVSDGIGKWYARTEQINE 489
+ A IAL + + ++G+ YAR Q+ E
Sbjct: 646 -DEAHIALMELMKWRTEGLDPMYARAVQMKE 675
>At2g40435.1 68415.m04988 expressed protein
Length = 158
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/99 (25%), Positives = 41/99 (41%)
Frame = +3
Query: 435 GSVRRYWKMVRSYRAN*RAPGQLATFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQN 614
GS++ ++++RS N A + + IQKL + + T S E T
Sbjct: 9 GSLQEKFQLLRSI-TNSHAENDTSIIMDA-SKYIQKLKQKVERFNQDPTAEQSSSEPTDP 66
Query: 615 KASFETIESGLKSLETNFNSGLNQLSEGIQIVATFKADG 731
K T+E+ K N SG NQ + ++ F+ G
Sbjct: 67 KTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIG 105
>At2g46180.1 68415.m05742 intracellular protein transport protein
USO1-related similar to Intracellular protein transport
protein USO1 (Swiss-Prot:P25386) [Saccharomyces
cerevisiae]
Length = 725
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 107 SEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI-VEEIKPSLKSDLENVE 256
++++ + + +KD+D L ++KKE +I KV+ E I K+ + VE
Sbjct: 493 AKEDAMKLSARLKDVDEQLESSKKEKEEITSKVLHAENIAAEWKNRVSKVE 543
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 256 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 411
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2
Query: 89 VVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVECRMK 268
V + +++ +E + QA+T +D LRA V+D K+I E+ + + R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592
Query: 269 MRKS 280
++KS
Sbjct: 593 LKKS 596
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 24 CSPHAQPPSRTRSPRPKI 77
CSP PPSRT P P +
Sbjct: 92 CSPRLSPPSRTMGPPPPV 109
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 256 VPDENEEIKRPLVDLRNPGPPQHQEHE 336
VPDE EEIK P + G H HE
Sbjct: 265 VPDEEEEIKDPFKVINENGDIVHISHE 291
>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
identical to GI:20302857
Length = 510
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 23 VLAARAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTI 142
V+AARA IPD +PE ++ + N ++ + + T+
Sbjct: 403 VVAARAGGIPDIIPEDQEGKTGFLFNPGDVEDCVTKLRTL 442
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 27.9 bits (59), Expect = 7.7
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = +1
Query: 259 PDENEEIKRPLVDLRNPGPP-QHQEHETQNPEHHEDAEKIVSSVKN-DINTAEIALRQGF 432
P + ++ ++ + P PP Q QE E + + E + ++V NTAE ALR+
Sbjct: 217 PQQQQQHQQQQQQHKPPPPPIQQQERENSSTDAPPQPETVTATVPAVQTNTAE-ALRERK 275
Query: 433 QEVSDGIGKWYARTEQINELQASLQLSKKISALRYKS*MKRYILLNQLT 579
+E+ + E ++ L LQ ++ +SA + K + ++QL+
Sbjct: 276 EEIK----RQKQDEEGLHLLTLLLQCAEAVSADNLEEANKLLLEISQLS 320
>At3g14490.1 68416.m01835 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 601
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +1
Query: 376 VSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQLSKKISALRYKS*MKR 555
V +KNDINT E + +G EV+ G+ Y + +++ +A +++ KI + YK M+
Sbjct: 492 VFRIKNDINTFEQEMSRG--EVAKGL-NCYMKQHGVSKEEAIGEMN-KIYSNYYKIIMEE 547
Query: 556 YI 561
Y+
Sbjct: 548 YL 549
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,519
Number of Sequences: 28952
Number of extensions: 277906
Number of successful extensions: 1160
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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