Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20308
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 36 0.031
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 29 3.5
10_08_0665 + 19688278-19688462,19688679-19688842,19688949-196891... 29 4.7
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 28 6.2
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 28 6.2
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 8.2
05_03_0373 - 13194723-13195847,13196219-13196809 28 8.2
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 8.2
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 35.9 bits (79), Expect = 0.031
Identities = 24/66 (36%), Positives = 31/66 (46%)
Frame = +2
Query: 89 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGTFPPN 268
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 269 LQ*KTM 286
L+ K +
Sbjct: 58 LKNKKL 63
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 537 GVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQKV 677
GV FDT + F+K N AL + D +LH N ++G S Y V
Sbjct: 142 GVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHLV 189
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 573 TLLFVYQTGCVHQPANPGSLVL 508
TLLFVYQTG P PG L+L
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLL 714
>10_08_0665 +
19688278-19688462,19688679-19688842,19688949-19689112,
19689249-19689502,19690064-19690175
Length = 292
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 389 VPSRV--TLRPAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERC 252
+PS V T + WI+++VA+VL+V F+V + N ERC
Sbjct: 227 LPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERC 274
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 537 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVS 680
G FDT F+K N L + + D ++N G S Y KVS
Sbjct: 296 GTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344
>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 180 RPRASLVLNSPAESPPTRKAERFLAPFLQICSER 281
RP A +L S P R A FLAP IC+ R
Sbjct: 1064 RPLAKHLLESQYFPPSVRSAYMFLAPLQLICTPR 1097
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 437 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 309
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 385 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 483
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 512 YSATSTTGPAKSRSKLVFTATVSLV---NEVFNFPVLVPVCGAKVPSRVTLRP 363
YS T SR + +FT S++ + FN L+P+C + + R T+ P
Sbjct: 699 YSLEGTDSLLPSRRRSLFTLATSMIMFFSRAFNVAPLIPICKSMLNER-TMDP 750
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,625
Number of Sequences: 37544
Number of extensions: 390057
Number of successful extensions: 1030
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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