Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20308
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                     93   1e-19
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         30   2.1  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)                       28   8.4  
SB_57317| Best HMM Match : SSF (HMM E-Value=0)                         28   8.4  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 39/86 (45%), Positives = 59/86 (68%)
 Frame = +1

Query: 241 KGFWHLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 420
           K F  L +K+   DYG++ +EKW TDN L+++IT++D+IA GLK+  + TFAP TG K+ 
Sbjct: 149 KVFGSLETKYKYSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSA 208

Query: 421 KLKTSFTNDTVAVNTNLDLDLAGPVV 498
           K+KT++  D +    ++D D AGP V
Sbjct: 209 KIKTAYKQDYLHATGDVDFDFAGPTV 234



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 27/61 (44%), Positives = 41/61 (67%)
 Frame = +3

Query: 510 VLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKL 689
           V+ Y+GW AG    +DT K+K   NNF+LGY++ DF +H+ V++   F GSIY ++S  L
Sbjct: 239 VVGYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNL 298

Query: 690 D 692
           +
Sbjct: 299 E 299



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +2

Query: 95  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGT 256
           P  Y DLGK+A DVF KGY FG  K+DLKT +++GVEF +  +S  ++GKVFG+
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGS 153


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 310 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 459
           +TD N L +D + +DK     K   E T    +   TGKL+T +  DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 612 DFALHTNVDNGKDFGGSIYQKV 677
           ++ +H ++  G+D+GGS YQ+V
Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415


>SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)
          Length = 249

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 672 SGRLNRRNLYHCLRLCGEQSHQIGNLEQSCSWRTLLFVYQTGCVHQ 535
           S R+NRR + H +R C +   + G +   C+W     +  T  VH+
Sbjct: 157 STRMNRR-IRHLVRRCCKLGAKGGEMGFDCNWDRFTALQYTNIVHR 201


>SB_57317| Best HMM Match : SSF (HMM E-Value=0)
          Length = 389

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 250 KNLSAFLVGGDSAGEFNTRLALG 182
           KNLS +++GG S G F T L+ G
Sbjct: 48  KNLSDYILGGRSLGSFVTALSAG 70


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 316  DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 465
            ++TLA +ITI  +  +A G  +  E TFAP+T TK  +   +    T    T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,614,628
Number of Sequences: 59808
Number of extensions: 448940
Number of successful extensions: 1102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)