Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20308
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    80   2e-15
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    29   4.2  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 44/124 (35%), Positives = 69/124 (55%)
 Frame = +1

Query: 169 TRPEDQERVWC*IHQRNHLQPGKRKGFWHLSSKFAVKDYGLTFTEKWNTDNTLATDITIQ 348
           TR  D + V       +++  GK  G  +L  K+ +  YG+T TEKWNT+N L T I + 
Sbjct: 32  TRAGDNKEVEFKSAASHNIGSGKLGG--NLDVKYKIPQYGITLTEKWNTENQLGTVIEVN 89

Query: 349 DKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAEY*TTRV 528
           ++   GLKVTL+  +AP  G ++GK+K  +   T  V  ++ +  A PV++ A    +R 
Sbjct: 90  EQFGRGLKVTLDSLYAPHAGKRSGKVKLDWALPTARVTADVGVTSA-PVINAAGV-FSRD 147

Query: 529 GWLV 540
           GWL+
Sbjct: 148 GWLI 151



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
 Frame = +2

Query: 89  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFG 253
           MAPP +ADLGK A D+F+KGY+FG  K+D  T++     VEF S  + N  SGK+ G
Sbjct: 1   MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGG 57



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +3

Query: 510 VLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKL 689
           V +  GWL G    FD+   K +  + A G+ +  + LH+ V N  DFG S+Y KV+  +
Sbjct: 143 VFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLYHKVASNV 202

Query: 690 DCG 698
           + G
Sbjct: 203 EVG 205


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
 Frame = +1

Query: 283 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND-TVAV 459
           Y  TFT  W+T++T+ T    QD   + +  T E T A  +      + T  T + T +V
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTEATTSV 518

Query: 460 NTNLDLDLA---GPVVDVAEY*TTRVG 531
            +++  D +   GP+    E  +T  G
Sbjct: 519 VSSVPPDSSTSKGPLETTTEETSTVEG 545


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 214  RNHLQPGKRKGFWHLSSKFAVKDYGLTFTEKWNTDNTLATD 336
            R H       G  + S K+ V  +G T  EKWN D  + TD
Sbjct: 1056 RKHSSKSNSAG--NASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 214  RNHLQPGKRKGFWHLSSKFAVKDYGLTFTEKWNTDNTLATD 336
            R H       G  + S K+ V  +G T  EKWN D  + TD
Sbjct: 1056 RKHSSKSNSAG--NASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,995,883
Number of Sequences: 27780
Number of extensions: 333050
Number of successful extensions: 872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)