Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20308
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ...    34   0.10 
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    33   0.24 
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    32   0.42 
At5g39020.1 68418.m04722 protein kinase family protein contains ...    29   3.9  
At3g30210.1 68416.m03811 myb family transcription factor (MYB121...    29   3.9  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   5.2  
At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5...    28   6.8  
At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    27   9.0  
At4g18600.1 68417.m02755 expressed protein                             27   9.0  
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ...    27   9.0  

>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
           [Solanum tuberosum] GI:515360; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 274

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 92  APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 214
           +P  +AD+GKKA D+ +K Y F   K  L   S +G EF +
Sbjct: 4   SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA 43


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 95  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 214
           P  + D+GKKA D+ ++ Y+    K  + T S SGV  TS
Sbjct: 5   PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS 43


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 95  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 229
           P  +AD+GK A D+ ++ Y     K  + T S SGV  TS    N
Sbjct: 5   PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48


>At5g39020.1 68418.m04722 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 813

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 238 RKGFWHLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKV----TLEGTFAP 399
           + GF  ++S F+VK  G T    +N D+T+   I + + +     +    TL  TF P
Sbjct: 113 KSGFDAVNSFFSVKVNGFTLLRNFNADSTVQASIPLSNSLIKEFIIPVHQTLNLTFTP 170


>At3g30210.1 68416.m03811 myb family transcription factor (MYB121)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain (2 copies)
          Length = 276

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 205 IHQRNHLQPGKRKGFWHLSSKFAVKDYGLTFTE-KWNT 315
           I+Q+ H Q G RKG W L     + +Y  +  E +W+T
Sbjct: 17  IYQQQHQQQGCRKGPWTLEEDKLLAEYVTSHGEGRWST 54


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 83  TDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGT 256
           T ++ P  ++ G+ A  +  K  +FG   LDL  K   +SG+  +S ITS   SGK    
Sbjct: 268 TSLSAPAISNGGRDAASL--KTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGKTTEV 325

Query: 257 FP 262
            P
Sbjct: 326 TP 327


>At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain; identical to cDNA putative c-myb-like
           transcription factor MYB3R-5 (MYB3R5)  GI:15375300
          Length = 548

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 217 NHLQPGKRKGFWHLSSKFAVKDYGLTFTEKW 309
           NHL PG RK  W +  + A+ +    +  KW
Sbjct: 171 NHLNPGIRKDAWTVEEESALMNSHRMYGNKW 201


>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 98  PYYADLGKKANDVFSKGYHFGVFKLDLKT 184
           P  +  G K N ++  GY+FGV+ L  KT
Sbjct: 330 PASSSPGLKPNCIYFVGYNFGVYDLTTKT 358


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 379  LEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAE 510
            + G+ AP + T+TG    +FT + VA + +L+  + G ++  +E
Sbjct: 1309 IPGSEAPVSTTETGLHNETFTEEPVATDISLNEAVFGEIIPGSE 1352


>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 578

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 422 FPVLVPVCGAKVPSRVTLRPAAILSWIVMS-VANVLSVFHFSVKVKP*SFTANLE 261
           FP+   V  A +P   T  PA +  W+V+S +  VL +  + + +   +F A +E
Sbjct: 431 FPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVE 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,188
Number of Sequences: 28952
Number of extensions: 318223
Number of successful extensions: 827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)