Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20306
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139     86   2e-17
01_05_0697 + 24372233-24372328,24372523-24372554,24372871-243729...    67   1e-11
07_03_0533 - 19178296-19178516,19178790-19178847,19179315-191793...    29   2.6  
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264...    29   4.6  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    28   6.0  
09_02_0327 - 7284829-7284889,7284946-7286126                           28   8.0  
08_01_0045 + 322679-323347                                             28   8.0  

>10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139
          Length = 287

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 16/103 (15%)
 Frame = +2

Query: 272 ALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQE----- 436
           A+E V DSSRYFV++I+D  G+ A++GLGFG+R+++FD NVAL DH K++K+E E     
Sbjct: 87  AVETVLDSSRYFVLRIEDGRGKHAFVGLGFGERNEAFDFNVALSDHEKYVKREHEKEAAD 146

Query: 437 -----SDQTPQGQLDL------GFKDGETIKINMKLLKKMGVG 532
                 ++   GQ+D+        K+GETI+IN+K     G G
Sbjct: 147 GGAGGGEENDDGQIDIHPAVNRRLKEGETIRINVKNKPSTGSG 189



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 26/59 (44%), Positives = 42/59 (71%)
 Frame = +3

Query: 81  IFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKCPII 257
           + V+KIPPRT++ GY+  +W   +  W+GR+R+VS G+   ++LED  SG+LFA C ++
Sbjct: 22  VSVYKIPPRTTSGGYKCGEWLQSDRIWSGRLRVVSCGDRCEIRLEDPASGDLFAACFVL 80


>01_05_0697 +
           24372233-24372328,24372523-24372554,24372871-24372971,
           24373050-24373122,24373267-24373298,24373482-24373651,
           24374029-24374127,24375460-24375855
          Length = 332

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = +3

Query: 66  FSEERIFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAK 245
           F     +V+ IPPR +   YRA +WN+ +  W G +++VSKG E ++KLEDK +GEL+A+
Sbjct: 23  FQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGTLKVVSKGEECIIKLEDKNTGELYAR 82



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
 Frame = +2

Query: 275 LEAVTDSSRYFVVKIQ---DDNGRAAYIGLGFGDRSDSFDLNVALQDHFKW 418
           +E V DSSRYFV++++   D   R A+IGLGF +R  ++D   AL DH K+
Sbjct: 93  VEPVIDSSRYFVLRVEENIDGRQRHAFIGLGFRERPQAYDFQAALHDHMKY 143


>07_03_0533 -
           19178296-19178516,19178790-19178847,19179315-19179370,
           19179527-19179646,19180446-19180599,19180911-19181018,
           19181134-19181197,19181342-19181518,19181679-19181824,
           19181912-19181941,19181999-19182150,19182266-19182347
          Length = 455

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 320 QDDNGRAAYIGLGFGDRSDSFDLNVAL 400
           +D NG A YIG G GD + SFD+   L
Sbjct: 281 EDPNGHAVYIGTGRGDLA-SFDMRTEL 306


>04_04_0479 -
           25524753-25525426,25525736-25525819,25526255-25526483,
           25526910-25527357,25528462-25528569,25528681-25528806,
           25528887-25528981,25529062-25529147,25529253-25529408,
           25529523-25529766
          Length = 749

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 295 AISYSFQCNSWIFIIGHFANNSPLVLSSNF 206
           A+ +S Q N  I  IGH   + PLVL+S F
Sbjct: 495 AVPFSGQNNMKILCIGHGGGSLPLVLASKF 524


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 401 EVQHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVSYQLQLPVQLLDIYY 252
           + +H ++ +  +H+ Q +Y QH H++    QQ     Q Q   Q L   Y
Sbjct: 162 QYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQYQHQNLQQQY 211


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 426 KNKRAIKHHRDNWILDLK 479
           KN R+++ HR N+I DLK
Sbjct: 255 KNPRSVRKHRHNYIFDLK 272


>08_01_0045 + 322679-323347
          Length = 222

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 176 PHATCPLWLLQVPICCPISSVRCSGWYFKN 87
           P ++ P+WLL  PI    S+  CSG  ++N
Sbjct: 41  PSSSPPVWLLSSPIRRSFSAADCSGSPWRN 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,447,117
Number of Sequences: 37544
Number of extensions: 325776
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)