Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20306
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   31   0.66 
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  29   3.5  
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    28   6.2  

>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 66  FSEERIFVFKIPPRTSNRGYRAADWNLQEPQ---WTGRMRLVSKGNELVMKLED 218
           + +E ++ F  P + S  G  AAD +  + Q   W G  R+VSK  E +++L++
Sbjct: 19  YKDECVYCFDSPVQLSLAGVLAADTSAYKEQVASWDGEKRVVSKHAESLLQLDN 72


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 510 NFMLILIVSPSLNPRSNCPCGV*SLSCSFFNH 415
           NF +  +    L+ RSN  C   SLSC  FNH
Sbjct: 75  NFEVAKVTVCCLHERSNAHCSKMSLSCVCFNH 106


>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 362 GDRSDSFDLNVALQDHFKW 418
           GD  +SFD+   L+D+FKW
Sbjct: 121 GDLKESFDIGHILEDYFKW 139


>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 369 LSPNPRPIYAARPLSSCIFTTK*RELSVTASSA-TPGYLLLGTSQIIR 229
           L P P P+YA + + + IF ++ R +S        P Y+ L  + +++
Sbjct: 266 LPPQPNPVYATKGMRTVIFGSRIRTVSFEGKKVLRPVYMSLSETDLLK 313


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 395 QHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNV 297
           QHL Q  Q   Q+Q + +QH   HL   +Q  +
Sbjct: 277 QHLQQQRQQRQQLQQQQIQHHKQHLQQQRQQEI 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,179,423
Number of Sequences: 59808
Number of extensions: 397545
Number of successful extensions: 963
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)