Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20306
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024748-2|AAF60412.1| 236|Caenorhabditis elegans Hypothetical ... 104 7e-23
AC024748-3|AAO38567.1| 69|Caenorhabditis elegans Hypothetical ... 64 9e-11
Z36948-3|CAA85412.1| 421|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical ... 29 4.1
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine re... 28 7.2
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 27 9.5
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 27 9.5
>AC024748-2|AAF60412.1| 236|Caenorhabditis elegans Hypothetical
protein Y110A2AR.3a protein.
Length = 236
Score = 104 bits (249), Expect = 7e-23
Identities = 47/104 (45%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Frame = +2
Query: 233 IICEVPNNKYPGVALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHF 412
+ + P + +PG A+EAV+DSSRYFV+++Q+DNG+ A++G GF +R D+FD NV LQDHF
Sbjct: 64 LYAKCPIDAHPGNAIEAVSDSSRYFVIRLQNDNGQQAFVGCGFQERGDAFDFNVTLQDHF 123
Query: 413 KWLKKEQE---SDQTPQGQLDLGFKDGETIKINMKLLKKMGVGQ 535
+++++ E D + LDL FK+G+TI IN+ K V +
Sbjct: 124 RYIERSAELEKQDLSAGPSLDLAFKEGQTISINIGKKDKSAVSR 167
Score = 77.4 bits (182), Expect = 9e-15
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3
Query: 78 RIFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKCPI 254
++FV++IPP G++AADWNL P WTGRMRLV+ G L M+LED + +L+AKCPI
Sbjct: 13 KVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLEDGETCDLYAKCPI 70
>AC024748-3|AAO38567.1| 69|Caenorhabditis elegans Hypothetical
protein Y110A2AR.3b protein.
Length = 69
Score = 64.1 bits (149), Expect = 9e-11
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = +3
Query: 78 RIFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLED 218
++FV++IPP G++AADWNL P WTGRMRLV+ G L M+LED
Sbjct: 13 KVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLED 58
>Z36948-3|CAA85412.1| 421|Caenorhabditis elegans Hypothetical
protein D2089.5 protein.
Length = 421
Score = 31.1 bits (67), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 296 SRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVA-LQDHFKWLKKEQESDQTPQGQLDLG 472
+R+ V+++ DD G+ I G RS +D + +QD ++ +K E P+ L
Sbjct: 302 ARHKVIRLNDD-GKVNKIQFGNAMRSWFYDCEPSKVQDVYRAMKTFTEYCYQPRNMLKFR 360
Query: 473 FKDGETIK-INMKLL 514
+DG+T+ N +LL
Sbjct: 361 LEDGDTVLWANQRLL 375
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical
protein C52A11.4d protein.
Length = 2491
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 289 SYSFQCNSWIFIIGHFANNSPLVLSSNFMTNSFPFDTNLMRPVHCGSCK 143
S+ FQC +FI+ + +NNS + F ++ F T RP GS +
Sbjct: 47 SFIFQCPFPLFIVSNISNNSS-IGHFKFQMSARSFLTQPFRPCSTGSTR 94
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical
protein C52A11.4d protein.
Length = 2491
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 289 SYSFQCNSWIFIIGHFANNSPLVLSSNFMTNSFPFDTNLMRPVHCGSCK 143
S+ FQC +FI+ + +NNS + F ++ F T RP GS +
Sbjct: 47 SFIFQCPFPLFIVSNISNNSS-IGHFKFQMSARSFLTQPFRPCSTGSTR 94
>AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical
protein Y75B8A.7 protein.
Length = 648
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = +2
Query: 251 NNKYPGVALEAVTDSSRYFVVKIQDDNG-RAAYIGLGFGDRSDSFDLNVALQDHFKWLKK 427
N KY G E + S KIQD G G G + D L+D + L+
Sbjct: 80 NKKYKGFLSELIGKSHIRVAAKIQDSEGSEDGSDGSDGGSEEELDDDEEELED--EELED 137
Query: 428 EQESDQTPQGQLDLGFKDGETIKINMKLLKKMGVGQQ 538
E D+ +L D +T+ ++K +++ G++
Sbjct: 138 EMIDDEDEADLFNLSESDLKTLDADLKKMEEEEAGEE 174
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
protein T16G12.1 protein.
Length = 1890
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 244 FAN-NSPLVLSSNFMTNSFPFDTNLMRPVHCGSCKFQSA 131
FAN S + S N P+ TNL + ++CG+ K+ A
Sbjct: 791 FANVKSACINSLNGTAWCNPYSTNLRKAIYCGAAKYAPA 829
>AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 3 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 78 VLH*NNTFISIHCL*KIML 22
VL NNTF+ IHCL +I+L
Sbjct: 57 VLFTNNTFVLIHCLARIVL 75
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 328 IILYFHNKIT*AISYSFQCNSWIFIIGH 245
+I FH K+T + + Q NSWI+ + H
Sbjct: 403 VIHCFHQKLTDLEAATLQANSWIYSMRH 430
>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
protein F40F12.5 protein.
Length = 1144
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 63 YFSEERIFVFKIPPRTSNRGYRAADWNLQE-PQWTGRMRLVSKGNE-LVMKLED 218
Y EE V +IPP T R DW + E +W + R S + L M +E+
Sbjct: 135 YGREEEPCVIEIPPGTMVREMADDDWKMSELKEWFTKSRASSHLRDGLAMPMEE 188
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 328 IILYFHNKIT*AISYSFQCNSWIFIIGH 245
+I FH K+T + + Q NSWI+ + H
Sbjct: 403 VIHCFHQKLTDLEAATLQANSWIYSMRH 430
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 328 IILYFHNKIT*AISYSFQCNSWIFIIGH 245
+I FH K+T + + Q NSWI+ + H
Sbjct: 403 VIHCFHQKLTDLEAATLQANSWIYSMRH 430
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,493,047
Number of Sequences: 27780
Number of extensions: 304034
Number of successful extensions: 778
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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