Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20306
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03900.1 68414.m00374 expressed protein                             77   8e-15
At3g58600.1 68416.m06531 expressed protein hypothetical protein ...    71   7e-13
At2g41490.1 68415.m05125 UDP-GlcNAc:dolichol phosphate N-acetylg...    31   0.72 
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote...    28   5.0  
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein...    28   6.7  
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein...    28   6.7  
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein...    28   6.7  
At2g31930.1 68415.m03900 expressed protein                             27   8.8  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    27   8.8  

>At1g03900.1 68414.m00374 expressed protein
          Length = 272

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 40/89 (44%), Positives = 62/89 (69%), Gaps = 10/89 (11%)
 Frame = +2

Query: 272 ALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLK--KEQESDQ 445
           ++E   DSSRYFV++I D  G+ A+IGLGF +R+++FD NVAL DH K+++  KE+E+ +
Sbjct: 87  SVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGE 146

Query: 446 TPQ--GQLDL------GFKDGETIKINMK 508
           T +    +D+        K+GETI+IN+K
Sbjct: 147 TSESDNHIDIHPAVNHRLKEGETIRINVK 175



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/56 (44%), Positives = 39/56 (69%)
 Frame = +3

Query: 81  IFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKC 248
           + V+KIPPRT++ GY+  +W   +  W+GR+R+VS  +   ++LED  SG+LFA C
Sbjct: 22  VSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAAC 77


>At3g58600.1 68416.m06531 expressed protein hypothetical protein
           F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
          Length = 302

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 8/86 (9%)
 Frame = +2

Query: 275 LEAVTDSSRYFVVKIQ---DDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQ 445
           +EAV DSSRYFV++++   D   R A+IGLGF +R++++D   AL DH K+L K++ +++
Sbjct: 107 VEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEAYDFQAALHDHMKYLNKKKTAEE 166

Query: 446 TPQ-----GQLDLGFKDGETIKINMK 508
             Q       +D   K+GETI + +K
Sbjct: 167 MEQHYQNTSSVDYSLKEGETIVLQLK 192



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 29/70 (41%), Positives = 45/70 (64%)
 Frame = +3

Query: 66  FSEERIFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAK 245
           F     +V+ IPPR +   YRA +W++ +  W G +++VSKG E ++KL DKT+GEL+A+
Sbjct: 37  FQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLVDKTTGELYAQ 96

Query: 246 CPIINIQELH 275
              +   ELH
Sbjct: 97  A-FLREGELH 105


>At2g41490.1 68415.m05125 UDP-GlcNAc:dolichol phosphate
           N-acetylglucosamine-1-phosphate transferase identical to
           GI:5804772
          Length = 431

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 346 ICSTTIIILYFHNKIT*AISYSFQCNSWIFIIGHFANNSPLVLSSNFM--TNSFPFDTN 176
           +CS  + +L FH K+   +  S   N+ + ++G F     + +++ ++   N F FD N
Sbjct: 59  LCSLYLYLLCFHYKVDNELKRSILINAGLSLVGFFVTLKMIPVTARYVLRRNMFGFDIN 117


>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 798

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -2

Query: 473 IQDPIVPVVFDRSLVLFSTI*NGLEVQHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVS 294
           +++ +V     R L  +  I  G E+  LD+T + Y  I+ R   ++    +F    +V 
Sbjct: 213 VREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIWKIFPASWHVP 272

Query: 293 YQL 285
           Y+L
Sbjct: 273 YRL 275


>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 395 QHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVS 294
           Q  +Q +  +HQ       HDH+H + S  NN S
Sbjct: 175 QEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHS 208


>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 395 QHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVS 294
           Q  +Q +  +HQ       HDH+H + S  NN S
Sbjct: 175 QEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHS 208


>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 395 QHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVS 294
           Q  +Q +  +HQ       HDH+H + S  NN S
Sbjct: 175 QEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHS 208


>At2g31930.1 68415.m03900 expressed protein
          Length = 143

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 422 KKEQESDQTPQGQLDLGFKDGETIKINMKLLKK 520
           K   E+D   +  LD  F+DGE IK  M+L+ K
Sbjct: 72  KLNGEADVNNKSSLDQHFEDGEGIKPTMQLVVK 104


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -3

Query: 181 TNLMRPVHCGSCKF-QSAALYPLLDV----LGGI-LKTNIRSSLK*HFHKYPLFIK 32
           T+L    HC S      +A  P LD+    L G+ LK   RS +  H HKYP FI+
Sbjct: 540 TSLYNSHHCPSLYICMLSAADPKLDIREIALEGLFLKEEGRSIVSNHDHKYPKFIE 595


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,408
Number of Sequences: 28952
Number of extensions: 274610
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)