Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20303
(756 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 135 1e-30
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 128 1e-28
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 94 4e-18
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 91 2e-17
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 87 4e-16
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 83 5e-15
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 82 2e-14
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 81 2e-14
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 81 2e-14
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 81 2e-14
UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor 4... 81 2e-14
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 81 3e-14
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 80 5e-14
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 79 9e-14
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 79 1e-13
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 79 1e-13
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 79 1e-13
UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1; ... 79 1e-13
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 79 2e-13
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 79 2e-13
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 78 3e-13
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 78 3e-13
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 77 4e-13
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 77 4e-13
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 77 5e-13
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 77 6e-13
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 76 8e-13
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 76 1e-12
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 76 1e-12
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 75 1e-12
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 75 1e-12
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 75 1e-12
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 75 1e-12
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 75 2e-12
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 75 2e-12
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 75 3e-12
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 75 3e-12
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 75 3e-12
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 75 3e-12
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 74 3e-12
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 74 4e-12
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 74 4e-12
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 74 4e-12
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 73 8e-12
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 73 8e-12
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 73 1e-11
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 73 1e-11
UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein; ... 72 1e-11
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 72 1e-11
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 72 2e-11
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 72 2e-11
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 71 2e-11
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 71 2e-11
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 71 3e-11
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 71 4e-11
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 71 4e-11
UniRef50_Q1VPX9 Cluster: ATP-independent RNA helicase; n=9; Bact... 71 4e-11
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 71 4e-11
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 71 4e-11
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 70 5e-11
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 70 5e-11
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 70 5e-11
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 70 5e-11
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 70 7e-11
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 70 7e-11
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 70 7e-11
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 70 7e-11
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 69 9e-11
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 69 9e-11
UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=... 69 9e-11
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 69 9e-11
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 69 9e-11
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 69 9e-11
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 69 1e-10
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 69 1e-10
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 69 2e-10
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 69 2e-10
UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1; ... 69 2e-10
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 69 2e-10
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 68 2e-10
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 68 2e-10
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 68 2e-10
UniRef50_A3J7I3 Cluster: ATP-independent RNA helicase; n=5; Bact... 68 2e-10
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 68 3e-10
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 68 3e-10
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 68 3e-10
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 68 3e-10
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 68 3e-10
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 68 3e-10
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 67 4e-10
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 67 4e-10
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 67 4e-10
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 67 4e-10
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 67 4e-10
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 67 4e-10
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 67 4e-10
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 67 4e-10
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 67 5e-10
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 67 5e-10
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 67 5e-10
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 67 5e-10
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 67 5e-10
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 67 5e-10
UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;... 66 7e-10
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 66 7e-10
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 66 7e-10
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 66 7e-10
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 66 7e-10
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 66 7e-10
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 66 9e-10
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 66 9e-10
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 66 9e-10
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 66 9e-10
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 66 9e-10
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 66 9e-10
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 66 1e-09
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 66 1e-09
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 66 1e-09
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 65 2e-09
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 65 2e-09
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 65 2e-09
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 65 2e-09
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 65 2e-09
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 65 2e-09
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 65 2e-09
UniRef50_Q88XN5 Cluster: ATP-dependent RNA helicase; n=2; Lactob... 65 2e-09
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 65 2e-09
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 65 2e-09
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 65 2e-09
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 65 2e-09
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 64 3e-09
UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole... 64 3e-09
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 64 3e-09
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 64 3e-09
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 64 3e-09
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 64 3e-09
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 64 3e-09
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 64 3e-09
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 64 4e-09
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 64 4e-09
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 64 4e-09
UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=... 64 4e-09
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 64 4e-09
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 64 4e-09
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 64 4e-09
UniRef50_Q58HG3 Cluster: DEAD-box RNA helicase; n=4; Eukaryota|R... 64 4e-09
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 64 4e-09
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 64 4e-09
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 64 4e-09
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 64 4e-09
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 64 4e-09
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 64 5e-09
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 64 5e-09
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 64 5e-09
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 64 5e-09
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 64 5e-09
UniRef50_A7ETZ1 Cluster: Putative uncharacterized protein; n=1; ... 64 5e-09
UniRef50_A6SDG8 Cluster: Putative uncharacterized protein; n=1; ... 64 5e-09
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 63 6e-09
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 63 6e-09
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 63 6e-09
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 63 6e-09
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 63 6e-09
UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Re... 63 6e-09
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 63 8e-09
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 63 8e-09
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 63 8e-09
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 63 8e-09
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 63 8e-09
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 63 8e-09
UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 63 8e-09
UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;... 63 8e-09
UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1; Ent... 62 1e-08
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 62 1e-08
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 62 1e-08
UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box fa... 62 1e-08
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 62 1e-08
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 62 1e-08
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 62 1e-08
UniRef50_Q836U7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 62 1e-08
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 62 1e-08
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 62 1e-08
UniRef50_Q1LSH5 Cluster: DEAD/DEAH box helicase-like protein pre... 62 1e-08
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 62 1e-08
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 62 1e-08
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 62 2e-08
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 62 2e-08
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 62 2e-08
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 62 2e-08
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 62 2e-08
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 62 2e-08
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 62 2e-08
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 61 3e-08
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 61 3e-08
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 61 3e-08
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 61 3e-08
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 61 3e-08
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 61 3e-08
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 61 3e-08
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 61 3e-08
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 61 3e-08
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 61 3e-08
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 61 3e-08
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 61 3e-08
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 61 3e-08
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 61 3e-08
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 60 4e-08
UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family pr... 60 4e-08
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 60 4e-08
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 60 4e-08
UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 60 4e-08
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 60 4e-08
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 60 4e-08
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 60 6e-08
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 60 6e-08
UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2; Ostreo... 60 6e-08
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 60 6e-08
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 60 6e-08
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 60 6e-08
UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2; ... 60 8e-08
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 60 8e-08
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 60 8e-08
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 60 8e-08
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 60 8e-08
UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter ... 60 8e-08
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 60 8e-08
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 60 8e-08
UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1; ... 60 8e-08
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 60 8e-08
UniRef50_UPI00005A557C Cluster: PREDICTED: similar to eukaryotic... 59 1e-07
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 59 1e-07
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 59 1e-07
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 59 1e-07
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 59 1e-07
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 59 1e-07
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 59 1e-07
UniRef50_Q389T9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 59 1e-07
UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, wh... 59 1e-07
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 59 1e-07
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 59 1e-07
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 59 1e-07
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 59 1e-07
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 59 1e-07
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 59 1e-07
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 58 2e-07
UniRef50_Q9Y7T7 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 58 2e-07
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 58 2e-07
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 58 2e-07
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 58 2e-07
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 58 2e-07
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 58 2e-07
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 58 2e-07
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 58 2e-07
UniRef50_Q4WRP2 Cluster: ATP-dependent RNA helicase mss116, mito... 58 2e-07
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 58 2e-07
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 58 3e-07
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 58 3e-07
UniRef50_Q1U8H0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 58 3e-07
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 58 3e-07
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 58 3e-07
UniRef50_Q4UG97 Cluster: ATP-dependent RNA helicase, putative; n... 58 3e-07
UniRef50_Q4UA43 Cluster: DEAD-family helicase, putative; n=3; Pi... 58 3e-07
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 58 3e-07
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 58 3e-07
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 58 3e-07
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 58 3e-07
UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51; Euteleo... 58 3e-07
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F... 58 3e-07
UniRef50_Q92AT6 Cluster: Lin1833 protein; n=13; Listeria|Rep: Li... 57 4e-07
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 57 4e-07
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 57 4e-07
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 57 4e-07
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 57 4e-07
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 57 4e-07
UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;... 57 4e-07
UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 57 4e-07
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 57 5e-07
UniRef50_Q2BIX8 Cluster: Probable ATP-dependent RNA helicase; n=... 57 5e-07
UniRef50_Q1WSN6 Cluster: ATP-dependent RNA helicase; n=1; Lactob... 57 5e-07
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 57 5e-07
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 57 5e-07
UniRef50_A3AD37 Cluster: Putative uncharacterized protein; n=2; ... 57 5e-07
UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2; ... 57 5e-07
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 57 5e-07
UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyosteli... 57 5e-07
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 57 5e-07
UniRef50_Q4N5F8 Cluster: ATP-dependent RNA helicase, putative; n... 57 5e-07
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 57 5e-07
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 56 7e-07
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 56 7e-07
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 56 7e-07
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 56 7e-07
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 56 7e-07
UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma j... 56 7e-07
UniRef50_A2EQ41 Cluster: DEAD/DEAH box helicase family protein; ... 56 7e-07
UniRef50_Q53FI9 Cluster: Nucleolar protein GU2 variant; n=3; Eut... 56 7e-07
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 56 7e-07
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 56 9e-07
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 56 9e-07
UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein; ... 56 9e-07
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 56 9e-07
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 56 9e-07
UniRef50_Q013X8 Cluster: DEAD/DEAH box RNA helicase; n=1; Ostreo... 56 9e-07
UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6; Plasmodiu... 56 9e-07
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 56 9e-07
UniRef50_A5K9H3 Cluster: Pre-mRNA splicing factor RNA helicase P... 56 9e-07
UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2; ... 56 9e-07
UniRef50_A4QQK0 Cluster: Putative uncharacterized protein; n=3; ... 56 9e-07
UniRef50_Q8SR49 Cluster: ATP-dependent rRNA helicase SPB4; n=1; ... 56 9e-07
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 56 9e-07
UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7; A... 56 9e-07
UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase Dbp... 56 9e-07
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 56 1e-06
UniRef50_Q03GJ4 Cluster: Superfamily II DNA and RNA helicase; n=... 56 1e-06
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 56 1e-06
UniRef50_A2EAD4 Cluster: DEAD/DEAH box helicase family protein; ... 56 1e-06
UniRef50_Q8H0U8 Cluster: DEAD-box ATP-dependent RNA helicase 42;... 56 1e-06
UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;... 56 1e-06
UniRef50_O74393 Cluster: ATP-dependent RNA helicase mak5; n=1; S... 56 1e-06
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 56 1e-06
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 56 1e-06
UniRef50_Q8A8L3 Cluster: ATP-independent RNA helicase; n=7; Bact... 55 2e-06
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 55 2e-06
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 55 2e-06
UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2; ... 55 2e-06
UniRef50_Q234J0 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_Q17KA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 55 2e-06
UniRef50_A7AWS5 Cluster: DEAD/DEAH box helicase and helicase con... 55 2e-06
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_A0EA02 Cluster: Chromosome undetermined scaffold_85, wh... 55 2e-06
UniRef50_P19109 Cluster: ATP-dependent RNA helicase p62; n=9; Eu... 55 2e-06
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 55 2e-06
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 55 2e-06
UniRef50_P38719 Cluster: ATP-dependent RNA helicase DBP8; n=14; ... 55 2e-06
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 55 2e-06
UniRef50_UPI00004994C0 Cluster: DEAD/DEAH box helicase; n=2; Ent... 55 2e-06
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 55 2e-06
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 55 2e-06
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 55 2e-06
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 55 2e-06
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 55 2e-06
UniRef50_Q7R0K7 Cluster: GLP_154_39979_41331; n=1; Giardia lambl... 55 2e-06
UniRef50_Q5CKB1 Cluster: ATP-dependent RNA helicase; n=2; Crypto... 55 2e-06
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 55 2e-06
UniRef50_A2DGJ7 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 55 2e-06
UniRef50_Q6FML5 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 55 2e-06
UniRef50_UPI0000F1F65D Cluster: PREDICTED: hypothetical protein;... 54 3e-06
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 54 3e-06
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 54 3e-06
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 54 3e-06
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 54 3e-06
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 54 3e-06
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 54 3e-06
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 54 3e-06
UniRef50_Q01EH4 Cluster: Ddx49 Ddx49-related DEAD box helicase s... 54 3e-06
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 54 3e-06
UniRef50_A1IIT5 Cluster: RNA helicase; n=1; Neobenedenia girella... 54 3e-06
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 54 3e-06
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 54 3e-06
UniRef50_A4RK80 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 54 3e-06
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 54 3e-06
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 54 3e-06
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 54 4e-06
UniRef50_A4AFV6 Cluster: ATP-dependent RNA helicase; n=3; Actino... 54 4e-06
UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n... 54 4e-06
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 54 4e-06
UniRef50_A7ECJ8 Cluster: Putative uncharacterized protein; n=1; ... 54 4e-06
UniRef50_P21372 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 54 4e-06
UniRef50_A5DU73 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 54 4e-06
UniRef50_P34640 Cluster: Probable ATP-dependent RNA helicase DDX... 54 4e-06
UniRef50_UPI0000E4A052 Cluster: PREDICTED: similar to DEAD/H box... 54 5e-06
UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=... 54 5e-06
UniRef50_Q7NAY1 Cluster: SrmB; n=1; Mycoplasma gallisepticum|Rep... 54 5e-06
UniRef50_Q2J919 Cluster: Helicase-like; n=3; Frankia|Rep: Helica... 54 5e-06
UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2; Frank... 54 5e-06
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 54 5e-06
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 54 5e-06
UniRef50_A7P8T9 Cluster: Chromosome chr3 scaffold_8, whole genom... 54 5e-06
UniRef50_Q5CWD0 Cluster: Prp5p C terminal KH. eIF4A-1-family RNA... 54 5e-06
UniRef50_Q4N7J8 Cluster: DEAD box RNA helicase, putative; n=2; T... 54 5e-06
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 54 5e-06
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 54 5e-06
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 54 5e-06
UniRef50_Q4PEX7 Cluster: ATP-dependent RNA helicase DBP8; n=1; U... 54 5e-06
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 54 5e-06
UniRef50_UPI00015B61D8 Cluster: PREDICTED: similar to vasa-like ... 53 7e-06
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 53 7e-06
UniRef50_UPI0000498707 Cluster: DEAD/DEAH box helicase; n=1; Ent... 53 7e-06
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 53 7e-06
UniRef50_Q2Z064 Cluster: Probable ATP-dependent RNA helicase; n=... 53 7e-06
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 53 7e-06
UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep... 53 7e-06
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 53 7e-06
UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia ... 53 7e-06
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 53 7e-06
UniRef50_Q4QIG1 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 53 7e-06
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 53 7e-06
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 53 7e-06
UniRef50_A0CUN8 Cluster: Chromosome undetermined scaffold_28, wh... 53 7e-06
UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1; ... 53 7e-06
UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87; ... 53 7e-06
UniRef50_Q9SF41 Cluster: DEAD-box ATP-dependent RNA helicase 45;... 53 7e-06
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 53 7e-06
UniRef50_A0LD66 Cluster: DEAD/DEAH box helicase domain protein; ... 53 9e-06
UniRef50_Q3LWF0 Cluster: ATP-dependent RNA helicase; n=1; Bigelo... 53 9e-06
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 53 9e-06
UniRef50_A7TRT2 Cluster: Putative uncharacterized protein; n=1; ... 53 9e-06
UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 53 9e-06
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 53 9e-06
UniRef50_UPI0000F2BC8C Cluster: PREDICTED: similar to eukaryotic... 52 1e-05
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 52 1e-05
UniRef50_A6DML6 Cluster: ATP-dependent RNA helicase; n=1; Lentis... 52 1e-05
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 52 1e-05
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 52 1e-05
UniRef50_Q6BFH3 Cluster: Nucleolar RNA helicase II, putative; n=... 52 1e-05
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 52 1e-05
UniRef50_Q6FU81 Cluster: ATP-dependent RNA helicase MSS116, mito... 52 1e-05
UniRef50_O54116 Cluster: Probable DEAD-box RNA helicase; n=10; S... 52 2e-05
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 52 2e-05
UniRef50_A6DUE8 Cluster: ATP-dependent RNA helicase (D-E-A-D box... 52 2e-05
UniRef50_Q9SWV9 Cluster: Ethylene-responsive RNA helicase; n=5; ... 52 2e-05
UniRef50_A4S3A0 Cluster: Predicted protein; n=2; Ostreococcus|Re... 52 2e-05
UniRef50_A4S107 Cluster: Predicted protein; n=1; Ostreococcus lu... 52 2e-05
UniRef50_A4RW46 Cluster: Predicted protein; n=2; Ostreococcus|Re... 52 2e-05
UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2; ... 52 2e-05
UniRef50_Q4Y0X7 Cluster: DEAD-box RNA helicase, putative; n=2; P... 52 2e-05
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 52 2e-05
UniRef50_Q4Q1P0 Cluster: DEAD box RNA helicase, putative; n=5; T... 52 2e-05
UniRef50_Q4JF01 Cluster: Vasa homlogue; n=2; Eukaryota|Rep: Vasa... 52 2e-05
UniRef50_Q388E8 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 52 2e-05
UniRef50_Q24I45 Cluster: DEAD/DEAH box helicase family protein; ... 52 2e-05
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 52 2e-05
UniRef50_A7AV91 Cluster: DEAD/DEAH box helicase, putative; n=1; ... 52 2e-05
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase... 52 2e-05
UniRef50_A4V6K8 Cluster: Putative RNA helicase protein; n=1; Dug... 52 2e-05
UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein; ... 52 2e-05
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 52 2e-05
UniRef50_P25808 Cluster: ATP-dependent rRNA helicase SPB4; n=10;... 52 2e-05
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 52 2e-05
UniRef50_Q754U8 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 52 2e-05
UniRef50_Q6C024 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 52 2e-05
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 52 2e-05
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 52 2e-05
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 52 2e-05
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 52 2e-05
UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellu... 52 2e-05
UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n... 52 2e-05
UniRef50_Q7PMT7 Cluster: ENSANGP00000010668; n=1; Anopheles gamb... 52 2e-05
UniRef50_Q4UBP8 Cluster: RNA helicase, putative; n=4; Eukaryota|... 52 2e-05
UniRef50_Q4Q8D5 Cluster: ATP-dependent RNA helicase, putative; n... 52 2e-05
UniRef50_Q2PZC2 Cluster: Vasa protein; n=3; Apidae|Rep: Vasa pro... 52 2e-05
UniRef50_A7RMK9 Cluster: Predicted protein; n=1; Nematostella ve... 52 2e-05
UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2; G... 52 2e-05
UniRef50_Q5VRY0 Cluster: DEAD-box ATP-dependent RNA helicase 39;... 52 2e-05
UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1; U... 52 2e-05
UniRef50_Q754J2 Cluster: ATP-dependent RNA helicase DBP7; n=1; E... 52 2e-05
UniRef50_Q5KHB7 Cluster: ATP-dependent RNA helicase DBP3; n=2; F... 52 2e-05
UniRef50_UPI0001555979 Cluster: PREDICTED: similar to ATP-depend... 51 3e-05
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 51 3e-05
UniRef50_Q9DF36 Cluster: RNA helicase II/Gu; n=9; Tetrapoda|Rep:... 51 3e-05
UniRef50_Q0S0C5 Cluster: Possible ATP-dependent RNA helicase; n=... 51 3e-05
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 51 3e-05
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 51 3e-05
UniRef50_Q9N341 Cluster: Putative uncharacterized protein; n=2; ... 51 3e-05
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 51 3e-05
UniRef50_Q7Q0A7 Cluster: ENSANGP00000011621; n=5; Endopterygota|... 51 3e-05
UniRef50_Q6BG49 Cluster: RNA helicase, putative; n=1; Paramecium... 51 3e-05
UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma j... 51 3e-05
UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma j... 51 3e-05
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 51 3e-05
UniRef50_Q4IBS2 Cluster: ATP-dependent RNA helicase MAK5; n=2; S... 51 3e-05
UniRef50_O00571 Cluster: ATP-dependent RNA helicase DDX3X; n=74;... 51 3e-05
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 51 3e-05
UniRef50_UPI0000F1E5FF Cluster: PREDICTED: similar to Pl10, part... 51 4e-05
UniRef50_Q9KNA4 Cluster: ATP-dependent RNA helicase, DEAD box fa... 51 4e-05
UniRef50_Q97PV7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 51 4e-05
UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2; Corynebacte... 51 4e-05
UniRef50_Q4AEL1 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 51 4e-05
UniRef50_A3TJG3 Cluster: ATP-dependent RNA helicase; n=5; Actino... 51 4e-05
UniRef50_Q65XX1 Cluster: Vasa-and belle-like helicase protein 1,... 51 4e-05
UniRef50_Q384E1 Cluster: Mitochondrial DEAD box protein; n=5; Tr... 51 4e-05
UniRef50_A1XCP2 Cluster: Vasa-like protein; n=2; Coelomata|Rep: ... 51 4e-05
UniRef50_Q97WT0 Cluster: ATP-dependent RNA helicase; n=4; Sulfol... 51 4e-05
UniRef50_Q9C551 Cluster: DEAD-box ATP-dependent RNA helicase 5; ... 51 4e-05
UniRef50_Q9FZ92 Cluster: Putative DEAD-box ATP-dependent RNA hel... 51 4e-05
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 135 bits (326), Expect = 1e-30
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATFSIS+LQ +D +RE QALILAPTRELA QIQK ++ALGD++N +CHACIGGTN
Sbjct: 86 TGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 145
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
V EDIR+L+ G HVV GTPGRV+D
Sbjct: 146 VGEDIRKLDYGQHVVAGTPGRVFD 169
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/59 (54%), Positives = 47/59 (79%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I RR+L IK+ VLDEADEML++GFK+QI+DV++ L QV+L+SAT+P ++LE++
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQRAI I+GRDVIAQ+QS
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQS 84
Score = 38.3 bits (85), Expect = 0.20
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +3
Query: 108 VVETFDDMNLKEELLRGIYAYGLK 179
V TFD M L+E+LLRGIYAYG +
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFE 59
Score = 36.3 bits (80), Expect = 0.82
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
M DP+RILV+++ELTLEGIK
Sbjct: 233 MTDPIRILVKRDELTLEGIK 252
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 128 bits (310), Expect = 1e-28
Identities = 58/85 (68%), Positives = 74/85 (87%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATF+ISILQQ++ +E QAL+LAPTRELAQQIQKV++ALGD++ A CHACIGGTN
Sbjct: 81 TGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTN 140
Query: 436 VREDIRQLE-XGVHVVVGTPGRVYD 507
VR ++++L+ H+VVGTPGRV+D
Sbjct: 141 VRNEMQKLQAEAPHIVVGTPGRVFD 165
Score = 85.4 bits (202), Expect = 1e-15
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ RR L IK+FVLDEADEMLSRGFKDQI+++F+ L+ +QV+LLSATMP DVLEV++
Sbjct: 167 LNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK 226
Score = 62.9 bits (146), Expect = 8e-09
Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Frame = +3
Query: 27 NGPSKDQG-SYDGPPGMDT-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGLK 179
+G S D + GP GMD G ++++W+++V+ FDDMNLKE LLRGIYAYG +
Sbjct: 2 SGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFE 54
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQRAI+PCI+G DVIAQAQS
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQS 79
Score = 41.1 bits (92), Expect = 0.029
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
MRDP+RILV+KEELTLEGIK
Sbjct: 229 MRDPIRILVKKEELTLEGIK 248
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 93.9 bits (223), Expect = 4e-18
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT TF+I LQ+ID + R+ Q +ILAP RELA+QI VV +G +LN + CIGGT+
Sbjct: 104 TGKTGTFTIGALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTS 163
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+E + + GVH+++ TPGR+ D
Sbjct: 164 TQETREKCKQGVHIIIATPGRLID 187
Score = 60.5 bits (140), Expect = 4e-08
Identities = 24/55 (43%), Positives = 39/55 (70%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L A ++L V+DEAD+ML +GF D ++ KM+ D+Q+ L SAT P +++E+S+
Sbjct: 194 LDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIALFSATFPQEIIELSK 248
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FE+PSAIQQ+AI P I G+DV+AQAQS
Sbjct: 76 FERPSAIQQKAIKPIILGKDVLAQAQS 102
Score = 41.5 bits (93), Expect = 0.022
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 TGTLDTDWDQVVETFDDMNLKEELLRGIYAYGLK--NLLQSSNAQ*CLASKDAM 233
T L +W + VETF+D+ L ++LLRGI++YG + + +Q + + KD +
Sbjct: 44 TQDLQENWIEQVETFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVL 97
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 91.5 bits (217), Expect = 2e-17
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I L+++ + + QALI+ PTRELA Q +VV LG H C GGTN
Sbjct: 94 TGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTN 153
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH++VGTPGRV D
Sbjct: 154 LRDDILRLNETVHILVGTPGRVLD 177
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +3
Query: 513 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLE 680
+R+ + LF++DEAD+MLSR FK I + L Q +L SAT P V E
Sbjct: 180 SRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKE 235
Score = 35.1 bits (77), Expect = 1.9
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPS IQ+ AI I GRD++A+A++
Sbjct: 66 FEKPSPIQEEAIPVAITGRDILARAKN 92
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 87.0 bits (206), Expect = 4e-16
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA+F I L +I+TS+ QALIL PTRELA Q +V LG H+ N + GGT
Sbjct: 84 TGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGT 143
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L+ VH++VGTPGR+ D
Sbjct: 144 TLRDDILRLQQPVHILVGTPGRILD 168
Score = 38.3 bits (85), Expect = 0.20
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLE 680
N +FV+DEAD++LS F I + + QV+L SAT P V E
Sbjct: 178 NKCGVFVMDEADKLLSEDFMPVIEQTLALCPQERQVMLFSATFPWTVKE 226
Score = 33.5 bits (73), Expect = 5.8
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FE+PS IQ++AI + GRD++A+A++
Sbjct: 56 FERPSPIQEQAIPMALTGRDILARAKN 82
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 83.4 bits (197), Expect = 5e-15
Identities = 40/85 (47%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGK+ + I +L++ID QAL+L PTRELA Q+ ++ I + HL K A GGT
Sbjct: 137 TGKSGAYLIPMLERIDLKKDHIQALVLVPTRELALQVSQISIQIAKHLGGVKVMATTGGT 196
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
N+R+DI +L+ VHVV+ TPGR+ D
Sbjct: 197 NLRDDIMRLDETVHVVIATPGRILD 221
Score = 33.1 bits (72), Expect = 7.6
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
V +AD++LS+ F + D+ L+ + Q++L SAT P V
Sbjct: 264 VSPQADKLLSQDFVALVEDIISFLAKNRQILLYSATFPISV 304
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 81.8 bits (193), Expect = 2e-14
Identities = 38/84 (45%), Positives = 52/84 (61%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F + I++++ R QAL+L PTRELA Q+ + + +G H K A GG +
Sbjct: 54 TGKTAAFGVPIVERLVPGQRAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQS 113
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ IR L GV VV+GTPGR+ D
Sbjct: 114 IERQIRSLRFGVDVVIGTPGRILD 137
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
R L + +++ VLDEADEML GF + I + + A+ Q +L SATMP ++
Sbjct: 141 RSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQTLLFSATMPPEI 193
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FE+PS IQ +AI +QG+DVI QAQ+
Sbjct: 26 FEEPSPIQAQAIPALLQGKDVIGQAQT 52
>UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 48;
n=5; Fungi/Metazoa group|Rep: DEAD (Asp-Glu-Ala-Asp) box
polypeptide 48 - Mus musculus (Mouse)
Length = 299
Score = 81.4 bits (192), Expect = 2e-14
Identities = 45/84 (53%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATFS+S+LQ +D Q L+ ALGD++N +CHACIGGTN
Sbjct: 86 TGKTATFSVSVLQCLDI-----QGLL----------------ALGDYMNVQCHACIGGTN 124
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
V EDIR+L+ G HVV GTPGRV+D
Sbjct: 125 VGEDIRKLDYGQHVVAGTPGRVFD 148
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/59 (54%), Positives = 47/59 (79%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I RR+L IK+ VLDEADEML++GFK+QI+DV++ L QV+L+SAT+P ++LE++
Sbjct: 150 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 208
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQRAI I+GRDVIAQ+QS
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQS 84
Score = 38.3 bits (85), Expect = 0.20
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +3
Query: 108 VVETFDDMNLKEELLRGIYAYGLK 179
V TFD M L+E+LLRGIYAYG +
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFE 59
Score = 36.3 bits (80), Expect = 0.82
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
M DP+RILV+++ELTLEGIK
Sbjct: 212 MTDPIRILVKRDELTLEGIK 231
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 81.4 bits (192), Expect = 2e-14
Identities = 39/88 (44%), Positives = 55/88 (62%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S TGKTA F+I IL++I R AL++ PTRELA Q+ + AL H + A
Sbjct: 64 SKTGTGKTAAFAIPILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVY 123
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++ E +++LE G ++VGTPGR+YD
Sbjct: 124 GGASMGEQLQKLEAGAEIIVGTPGRIYD 151
Score = 48.8 bits (111), Expect = 1e-04
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I RR L + + LDEADEML+ GF +++ + L D Q +L SAT+P D+ ++ R
Sbjct: 153 IRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLLFSATVPADIEQIIR 212
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 81.4 bits (192), Expect = 2e-14
Identities = 41/84 (48%), Positives = 52/84 (61%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I IL+ ID S R QALILAPTRELA Q+ + + ++ GG +
Sbjct: 51 TGKTAAFGIPILETIDESSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQS 110
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ IR+L GV +VVGTPGR+ D
Sbjct: 111 IDRQIRELRRGVQIVVGTPGRILD 134
Score = 59.3 bits (137), Expect = 1e-07
Identities = 23/60 (38%), Positives = 42/60 (70%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I+RR + + VLDEADEML+ GF D + ++ K +S + +++L SAT+PD ++++++
Sbjct: 136 ISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLLFSATLPDSIMKLAK 195
>UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor
4A-2; n=5; Oryza sativa|Rep: Putative eukaryotic
initiation factor 4A-2 - Oryza sativa subsp. japonica
(Rice)
Length = 416
Score = 81.4 bits (192), Expect = 2e-14
Identities = 40/81 (49%), Positives = 50/81 (61%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 438
G T T ILQ++D + ECQAL+L PT +LA + Q V+ LG L+AK HA GGT+
Sbjct: 95 GTTVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQFLSAKAHAFCGGTSA 154
Query: 439 REDIRQLEXGVHVVVGTPGRV 501
ED + L GV V VGTP V
Sbjct: 155 HEDQQILSTGVQVAVGTPCHV 175
Score = 55.6 bits (128), Expect = 1e-06
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
RAL + I++FVLDEADE+L RGFKDQIH + + L Q SA+M + LE+ R
Sbjct: 182 RALCPDHIRMFVLDEADEVL-RGFKDQIHGIIQFLPTKTQFGFFSASMSHEALEMCR 237
>UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 395
Score = 81.0 bits (191), Expect = 3e-14
Identities = 35/84 (41%), Positives = 56/84 (66%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT S+S+L D S+++ Q LIL TR+L ++ +++ALG LN HAC G +
Sbjct: 70 TGKTTVMSLSVLSIFDLSVKKIQVLILQKTRKLTEENAGLIMALGKFLNVSIHACSEGNS 129
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+++DI ++ GV +V+GTP RV++
Sbjct: 130 IQDDISVVQQGVQIVLGTPDRVFE 153
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLE 680
+ R+ + +K+ +LDEADEML K ++ +FK L Q +L++AT+ D+L+
Sbjct: 155 VQRKEISFAHLKMIILDEADEMLIDESKSLVYCIFKYLPPKPQYVLVTATLSQDILD 211
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQ 244
F +P +QQRA++P IQGRDV+ Q
Sbjct: 42 FIRPLEVQQRALVPLIQGRDVVIQ 65
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 80.2 bits (189), Expect = 5e-14
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F + +LQQI+ S+++ Q L+L PTREL QQ+ K + ++ A GG
Sbjct: 50 TGKTAAFGLPVLQQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVRIHTEAVYGGK 109
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYDR*LVVRFMPTPSNFLFLM 561
+ E I++LE H++V TPGR+ D L+ R SN +L+
Sbjct: 110 KIEEQIKKLETPKHILVATPGRLLD--LIARKAVNLSNLKYLI 150
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R+A++ + +K +LDEADEML+ GF I + K+ + +L ++T+ ++ + R
Sbjct: 136 IARKAVNLSNLKYLILDEADEMLNMGFLPDIDKIMKIAKPTARKLLFTSTLGSELKLIIR 195
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 79.4 bits (187), Expect = 9e-14
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F++ IL ID +R QAL+L PTRELAQQ+ + + G + + + GG
Sbjct: 57 TGKTAAFALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGA 116
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++R+ ++ L G H+VV TPGR+ D
Sbjct: 117 DMRQQLKSLREGTHIVVATPGRLLD 141
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I RR++ I VLDEADEML GF D + + + +V L SATMP V +++
Sbjct: 143 IERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALFSATMPKRVRDIA 201
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 79.0 bits (186), Expect = 1e-13
Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGK+ + I +L+++D QA+++ PTRELA Q+ ++ I + H+ AK A GGT
Sbjct: 129 TGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 188
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
N+R+D+ +L+ HVV+ TPGR+ D
Sbjct: 189 NLRDDVMRLDDTGHVVIATPGRILD 213
Score = 33.9 bits (74), Expect = 4.4
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+++ VLDEAD++LS+ F + L + Q++L SAT P
Sbjct: 225 VQMVVLDEADKLLSQDFVQIMEAFILTLPKNRQILLYSATFP 266
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 79.0 bits (186), Expect = 1e-13
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDT--SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
TGKTA FSI IL+Q+D+ R+ QA+++ PTRELA Q+ L + + GG
Sbjct: 92 TGKTAAFSIPILEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGG 151
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
N+ +RQLE G +VVGTPGRV+D
Sbjct: 152 KNMNRQLRQLENGTQLVVGTPGRVHD 177
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ R L N + VLDEAD ML GF+ QI + + + Q +LLSAT+P
Sbjct: 179 LQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLLSATLP 230
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 79.0 bits (186), Expect = 1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I +++ ID+++++ QAL+L+PTRELA Q+ + + LG + GG +
Sbjct: 93 TGKTAAFGIPLIENIDSTVKDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGAS 152
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
R I ++ G H+VV TPGR+ D
Sbjct: 153 YRTQIDGIKRGAHIVVATPGRLVD 176
Score = 36.7 bits (81), Expect = 0.62
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 632
+ ++ + ++K VLDEADEMLS GFK+ + + D
Sbjct: 178 LEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPD 218
>UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 339
Score = 79.0 bits (186), Expect = 1e-13
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 414
TGKTATF ILQQ++ + +CQAL+LAPTRELAQQI+KV+ ALGDHLN K +
Sbjct: 60 TGKTATFCSGILQQLNEELTQCQALVLAPTRELAQQIEKVMRALGDHLNVKIY 112
Score = 38.7 bits (86), Expect = 0.15
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +2
Query: 176 EKPSAIQQRAIMPCIQGRDVIAQAQS 253
EKPSAIQQ+ I+P +G DVI QAQS
Sbjct: 33 EKPSAIQQKGIVPFCKGLDVIQQAQS 58
Score = 34.3 bits (75), Expect = 3.3
Identities = 13/31 (41%), Positives = 25/31 (80%)
Frame = +3
Query: 597 QIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+I+++F++L +QV + SATMP +VLE+++
Sbjct: 110 KIYEIFQLLPERIQVGVFSATMPPEVLEITK 140
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 78.6 bits (185), Expect = 2e-13
Identities = 38/88 (43%), Positives = 54/88 (61%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S TGKTA FS+ IL+++D + QA++L PTRELA Q+ + + + A
Sbjct: 47 SQTGTGKTAAFSLPILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIY 106
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++ + QL+ GVH+VVGTPGRV D
Sbjct: 107 GGQSIDRQMLQLKRGVHIVVGTPGRVID 134
Score = 51.6 bits (118), Expect = 2e-05
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV-LEVS 686
+ R L + +K FVLDEADEMLS GF D + + D Q L SATMP + + V+
Sbjct: 136 LERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFSATMPPSIRMLVN 195
Query: 687 RCL*EILYAYLYRRKSLPWKV 749
+ L + + + K+ P K+
Sbjct: 196 KFLRSPVTVTVEQPKATPNKI 216
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 78.6 bits (185), Expect = 2e-13
Identities = 39/88 (44%), Positives = 53/88 (60%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+P TGKTA + + +LQ+I ++ Q LI+ PTRELA Q+ V LG +L + A
Sbjct: 46 APTGTGKTAAYLLPVLQRIQRG-KKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVY 104
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + IR L GV V+VGTPGR+ D
Sbjct: 105 GGQAIERQIRGLRQGVEVIVGTPGRILD 132
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
I R+ A IK+ +LDEADEML GF D I + L+ Q +L SAT+P
Sbjct: 134 IGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLP 185
>UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio
"Eukaryotic translation initiation factor 4A, isoform
1A.; n=1; Takifugu rubripes|Rep: Homolog of Brachydanio
rerio "Eukaryotic translation initiation factor 4A,
isoform 1A. - Takifugu rubripes
Length = 357
Score = 77.8 bits (183), Expect = 3e-13
Identities = 39/76 (51%), Positives = 51/76 (67%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ RRA+ A I+L VLDEAD+ML GFKDQIH++F L +VQ ILLSATMP VLE ++
Sbjct: 117 LARRAVSAKAIRLLVLDEADQMLGNGFKDQIHEIFCKLPTNVQAILLSATMPAHVLEATK 176
Query: 690 CL*EILYAYLYRRKSL 737
+ L +R+ L
Sbjct: 177 MFMQDPVKILIKREEL 192
Score = 58.0 bits (134), Expect = 2e-07
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 384
TGKTAT+ I+ LQ+ID + QA+ILAPTRELA QIQKVV++
Sbjct: 69 TGKTATYVIAALQRIDMMKEDTQAIILAPTRELANQIQKVVLS 111
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/27 (81%), Positives = 26/27 (96%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQ+AI+PCI+G DVIAQ+QS
Sbjct: 41 FEKPSAIQQQAIVPCIKGFDVIAQSQS 67
Score = 36.7 bits (81), Expect = 0.62
Identities = 14/22 (63%), Positives = 21/22 (95%)
Frame = +2
Query: 689 MLMRDPVRILVQKEELTLEGIK 754
M M+DPV+IL+++EELT+EGI+
Sbjct: 177 MFMQDPVKILIKREELTMEGIQ 198
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 77.8 bits (183), Expect = 3e-13
Identities = 40/85 (47%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F + +L ID + RE QALILAPTRELAQQI + + HL GG
Sbjct: 62 TGKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGA 121
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
N+ IR + G ++V TPGR+ D
Sbjct: 122 NIMNQIRDIRRGAQIIVATPGRLMD 146
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
RR + + +K VLDEADEML+ GFK+ I + + L SATM ++ +
Sbjct: 150 RREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRNIWLFSATMAREIKRI 205
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 77.4 bits (182), Expect = 4e-13
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGT 432
TGKTA F + L +IDTSI++ Q ++LAPTRELA Q+ + + + G D + GG
Sbjct: 63 TGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQ 122
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ +QLE G VVVGTPGR+ D
Sbjct: 123 SYGPQFQQLERGAQVVVGTPGRLMD 147
Score = 46.4 bits (105), Expect = 8e-04
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ R++L + +++ VLDEADEML+ GF + I + + Q+ L SATMP + +++
Sbjct: 149 LRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIA 207
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 77.4 bits (182), Expect = 4e-13
Identities = 37/84 (44%), Positives = 53/84 (63%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F+I +L+ ++ R QALI+ PTREL Q+ + + +G ++ K A GG +
Sbjct: 52 TGKTAAFAIPVLENLEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQS 110
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ I QL GVHV+V TPGR+ D
Sbjct: 111 IGNQIAQLRRGVHVIVATPGRLID 134
Score = 43.2 bits (97), Expect = 0.007
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R + I VLDEADEML+ GF D I + + Q +L SAT+ +L ++R
Sbjct: 136 IERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSATVSKPILRIAR 195
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 77.0 bits (181), Expect = 5e-13
Identities = 33/84 (39%), Positives = 51/84 (60%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F + +L ++DT Q +++APTRELA Q+ + + +G H + GG +
Sbjct: 50 TGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQD 109
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ IR L+ H++VGTPGR+ D
Sbjct: 110 INRQIRALKKHPHIIVGTPGRILD 133
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R+ L ++ VLDEADEML+ GF + I + + Q +L SATMPD + ++
Sbjct: 135 INRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIA 193
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 76.6 bits (180), Expect = 6e-13
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S TGKTA F + +L++I R +ALIL PTRELA Q+ + L H K A
Sbjct: 73 SKTGTGKTAAFGLPLLEKIPADERRVRALILCPTRELALQVADELKMLAKHKGLKIAAIY 132
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++++ LE G ++VGTPGRV+D
Sbjct: 133 GGASMKQQEDALEEGTPIIVGTPGRVFD 160
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I R L + VLDEADEML++GF +++ + L QV+L SAT+P D+
Sbjct: 162 INRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLFSATVPTDI 216
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 76.2 bits (179), Expect = 8e-13
Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F + +LQ+ID + R QAL+L PTRELA Q+ + AL HL + + GG
Sbjct: 53 TGKTAAFGLPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQ 112
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ L G VVVGTPGR+ D
Sbjct: 113 PIEPQASALRRGAQVVVGTPGRILD 137
Score = 55.2 bits (127), Expect = 2e-06
Identities = 26/60 (43%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R L +++ VLDEADEML GF++ I + + VQ SATMPD +LE++R
Sbjct: 139 INRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFFSATMPDGILELAR 198
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 75.8 bits (178), Expect = 1e-12
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA FS+ +L +++ S + QA+++APTRELA Q+ + LG ++ K GG
Sbjct: 74 TGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGA 133
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ + +R L+ G H+VVGTPGRV D
Sbjct: 134 SILDQMRALKSGAHIVVGTPGRVKD 158
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
ITR LH + F+LDEADEML GF D + + + Q +L SATMP V E+
Sbjct: 160 ITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEI 217
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 75.8 bits (178), Expect = 1e-12
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F I ++ +D SI + Q+LIL PTRELA Q+ + L + A GG
Sbjct: 49 TGKTAAFGIPAIEHVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGE 108
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ IR L+ G H+VVGTPGR+ D
Sbjct: 109 SIERQIRDLKAGAHIVVGTPGRIID 133
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ RR L+A+ + +LDEADEML+ GF++ I + L + Q +L SAT+ +L +++
Sbjct: 135 LDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFSATLAPPILALAK 194
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 75.4 bits (177), Expect = 1e-12
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGT 432
TGKTA F++ +L+++++ + Q L+LAPTRELA Q+ A H + K A GGT
Sbjct: 119 TGKTAAFALPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGT 178
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ R I L GV VVVGTPGRV D
Sbjct: 179 DFRSQISTLRRGVDVVVGTPGRVMD 203
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L + + VLDEADEML GF D + + + L + QV+L SATMP ++ +S+
Sbjct: 210 LDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPPEIRRLSK 264
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 75.4 bits (177), Expect = 1e-12
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGT 432
TGKTA F++ +L + +RE Q L+LAPTRELAQQ+ V + H N K + GG+
Sbjct: 54 TGKTAAFTLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGS 113
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ R L+ G VVGTPGRV D
Sbjct: 114 DFGSQFRALKQGPQWVVGTPGRVMD 138
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R L I+ VLDEADEML GF D + V + Q+ L SATMP + V+
Sbjct: 140 IRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALFSATMPKQIKAVA 198
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 75.4 bits (177), Expect = 1e-12
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F +LQ ID S + Q LI+APTREL QI + H+ + A GG+
Sbjct: 50 TGKTAAFGFPLLQNIDASSKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGS 109
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
N++E R++ G +VV TPGR+ D
Sbjct: 110 NIQEQAREISRGAQIVVATPGRMQD 134
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
RR + + VLDEADEML+ GF + I ++ D L SATMP +V +++
Sbjct: 138 RRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTWLFSATMPREVARIAK 195
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F+I ILQ + T+ + AL+LAPTRELA QI++ ALG + + IGG +
Sbjct: 146 SGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMS 205
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ E R L HV++ TPGR+ D
Sbjct: 206 MMEQARDLMRKPHVIIATPGRLID 229
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 74.9 bits (176), Expect = 2e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F+I IL +D SI Q L++APTRELA QI + LG + +K +GG +
Sbjct: 49 TGKTAAFAIPILSNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVS 108
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ L GV++VV TPGR+ D
Sbjct: 109 YEKQKAALNSGVNIVVATPGRLED 132
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ + + + IK F LDEADE+L GF ++I + L Q +AT + ++S+
Sbjct: 134 LAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFFTATFDEKTKKLSQ 193
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 74.9 bits (176), Expect = 2e-12
Identities = 34/88 (38%), Positives = 54/88 (61%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S +GKTA+F+I + + I+ QALI+ PTRELA Q++ + +G +C A
Sbjct: 47 SKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIF 106
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
G ++++ I +L+ VH+VV TPGR+ D
Sbjct: 107 GKQSIKDQIAELKQRVHIVVATPGRILD 134
Score = 41.1 bits (92), Expect = 0.029
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I R ++ +K V+DEAD+M ++GF +Q+ + L + V L SAT+ +++
Sbjct: 136 INRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEI 190
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 74.5 bits (175), Expect = 3e-12
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I +++++ T R QALIL PTRELA Q+ + L H + GG +
Sbjct: 54 TGKTAAFGIPVVEKVSTG-RHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQS 112
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ I+ L+ GV VV+GTPGR+ D
Sbjct: 113 IVHQIKALKQGVQVVIGTPGRIID 136
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R+ L + + +LDEADEML GF D I + + + + Q +L SATMP + ++SR
Sbjct: 138 LRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQTLLFSATMPPAIKKLSR 197
Score = 33.9 bits (74), Expect = 4.4
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 161 IRLWFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
I + FE+PS IQ +AI + G DVI QAQ+
Sbjct: 22 IEMGFEEPSPIQAKAIPAILAGGDVIGQAQT 52
>UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4;
Clostridiales|Rep: ATP-dependent RNA helicase -
Clostridium tetani
Length = 386
Score = 74.5 bits (175), Expect = 3e-12
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH--LNAKCHA 417
SP +GKT + + I Q+IDTS RE QA+ILAPT ELA QI K + L + ++
Sbjct: 47 SPTGSGKTLAYLLPIFQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGNSKVSVTSTP 106
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IG NV+ I +L+ HV+VG+ GR+ +
Sbjct: 107 IIGNANVKRQIEKLKEKPHVIVGSSGRILE 136
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I ++ + A+TIK V+DE D++L I DV K D Q+++ SAT+ + L V++
Sbjct: 138 IKKKKISAHTIKTIVVDEGDKLLDHSNLSSIKDVIKTTMRDRQLMVFSATINEKTLNVAK 197
Query: 690 CL 695
L
Sbjct: 198 GL 199
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 74.5 bits (175), Expect = 3e-12
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F++ +L ++D RE Q L+LAPTRELAQQ+ + G + + + GG
Sbjct: 57 TGKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQ 116
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
RE + L G V+VGTPGRV D
Sbjct: 117 EYREQLSGLRRGAQVIVGTPGRVID 141
Score = 46.4 bits (105), Expect = 8e-04
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+ R +L + + VLDEADEML GF D + V D Q + SAT+PD++ +
Sbjct: 143 LDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVFFSATLPDEISRI 200
>UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 561
Score = 74.5 bits (175), Expect = 3e-12
Identities = 39/84 (46%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F+I ILQ++ ALIL PTRELA QI + ALG + KC +GG +
Sbjct: 137 TGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRS 196
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ R+L HVVV TPGR+ D
Sbjct: 197 LIHQARELSERPHVVVATPGRLAD 220
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I+ FVLDEAD ML + DQ+ +F+ +S Q +LLSAT+ +++
Sbjct: 236 IQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNI 280
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 74.1 bits (174), Expect = 3e-12
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGT 432
TGKTA F + +LQ ID + QA+ILAPTREL QQI +I+ +H + A + GG
Sbjct: 52 TGKTAAFGLPLLQLIDVNNDAIQAIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGI 111
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ I +L+ H++V TPGR+ D
Sbjct: 112 PIKPQIERLKEATHIIVATPGRLAD 136
Score = 36.7 bits (81), Expect = 0.62
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ R A+ +I F+LDEADEM++ K+ + + K + + L +AT+P
Sbjct: 138 VKREAIDIKSISYFILDEADEMVT-ALKEGLDSIIKEIPKARRTFLFTATLP 188
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 73.7 bits (173), Expect = 4e-12
Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +1
Query: 235 YRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKC 411
+ S TGKTA+F + IL++I+ + R QA+I+APTRELA QI + G + N
Sbjct: 42 FGKSSTGTGKTASFVLPILEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVI 101
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IGG ++R+ I++L+ +VVGTPGRV D
Sbjct: 102 APLIGGADMRDQIKRLKDS-QIVVGTPGRVND 132
Score = 55.2 bits (127), Expect = 2e-06
Identities = 24/59 (40%), Positives = 40/59 (67%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ R+ L + ++ +LDEADEML GFK++I +F+ +S DVQ+ L SAT V++++
Sbjct: 134 LNRKTLKLDDVRTIILDEADEMLKMGFKNEIDALFERVSPDVQIGLFSATTSPKVMQIA 192
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 73.7 bits (173), Expect = 4e-12
Identities = 34/88 (38%), Positives = 56/88 (63%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
SP TGKT +++ +L++I + QA+ILAP+REL QI +V+ + + I
Sbjct: 48 SPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLI 107
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG NV++ + +L+ H++VGTPGRV++
Sbjct: 108 GGANVKKQVEKLKKHPHIIVGTPGRVFE 135
Score = 33.1 bits (72), Expect = 7.6
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I + L + +K VLDE D+++ ++ + + K D Q++ SAT+ + +V R
Sbjct: 137 IKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTLRDRQLLCFSATLKKETEDVLR 196
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 73.7 bits (173), Expect = 4e-12
Identities = 35/84 (41%), Positives = 54/84 (64%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA++ + +L I++S Q +IL P RELA QI + V + + +GGT+
Sbjct: 156 TGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTS 215
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+++DI ++ GVHV+VGTPGR+ D
Sbjct: 216 MQDDIIRVSNGVHVMVGTPGRIVD 239
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 72.9 bits (171), Expect = 8e-12
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
TGKTA F +I+ D S ++ +ALILAPTRELA Q+ + ++ LG H GG
Sbjct: 52 TGKTAAFGCAIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGG 111
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
+ IR L+ GV +VVGTPGRV D
Sbjct: 112 QPIDRQIRALKNGVDIVVGTPGRVLD 137
Score = 59.7 bits (138), Expect = 8e-08
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R++L N I VLDEADEML+ GF D + ++ K L D Q +L SATMP + +++R
Sbjct: 139 IRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSATMPPQIKKLAR 198
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 72.9 bits (171), Expect = 8e-12
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F + +LQQID R Q+LIL PTREL QI + +++ K GG+
Sbjct: 51 TGKTAAFGLPLLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGS 110
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ IR L+ GVH++V TPGR+ D
Sbjct: 111 SIDSQIRSLKRGVHIIVATPGRLLD 135
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R+ + +T+ V+DEADEML+ GF D I+ + + + +L SATM ++ +S+
Sbjct: 139 RKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNTLLFSATMSPEIARISK 196
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 72.5 bits (170), Expect = 1e-11
Identities = 42/85 (49%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
+GKTA FS+ IL +I+ QALIL PTRELA Q+ + LG L K A GG
Sbjct: 95 SGKTAAFSLPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQ 154
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ RE LE GV +VVGTPGR+ D
Sbjct: 155 SGREQADALENGVQIVVGTPGRLAD 179
Score = 51.6 bits (118), Expect = 2e-05
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R + + +K VLDEAD+ML GF D+I V + L Q +L SAT P+ + +SR
Sbjct: 181 VGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQTVLFSATFPESIEHLSR 240
>UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 389
Score = 72.5 bits (170), Expect = 1e-11
Identities = 34/82 (41%), Positives = 54/82 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTATFSI L ++ + + + +I++PTRELA Q + + +LG A AC+GG +
Sbjct: 68 SGKTATFSIGTLARLRLTSKTTELIIVSPTRELAIQTENTLKSLG----ANTRACVGGNS 123
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
+ D++ L+ G+H V GTPGR+
Sbjct: 124 LGADVKALQKGIHCVSGTPGRI 145
Score = 38.7 bits (86), Expect = 0.15
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ A ++ VLDEADEML+ FK I D+ + L Q ++++AT+ DV+E++
Sbjct: 154 IQAEKVQSVVLDEADEMLT-SFKSTIMDILQKL-PHAQKVIVTATVSADVVELA 205
>UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 475
Score = 72.1 bits (169), Expect = 1e-11
Identities = 32/60 (53%), Positives = 46/60 (76%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I ++ L + +KLF+LDEADEML RGFKDQI+ +F+ L D+QV L SATM ++LE+++
Sbjct: 234 IQKKTLVTDHLKLFILDEADEMLGRGFKDQINKIFQNLPHDIQVALFSATMAPEILEITK 293
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/49 (67%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQ-IQKVVIALGDHL 399
TGKTATFSI+ LQ IDTS QALILAPTRELAQQ I ++ LG +L
Sbjct: 82 TGKTATFSIATLQVIDTSSPHTQALILAPTRELAQQTITRIFFILGVNL 130
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = +1
Query: 367 QKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+KV++ LG+ L +AC GGT+ +ED ++L GV VVVGTPGRV D
Sbjct: 186 KKVIMYLGEFLKVSAYACTGGTDPKEDRKRLREGVQVVVGTPGRVLD 232
Score = 41.5 bits (93), Expect = 0.022
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPS IQQ I+P I+G+D IAQAQS
Sbjct: 54 FEKPSPIQQCGIIPIIKGKDTIAQAQS 80
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/84 (40%), Positives = 51/84 (60%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I I+++++ QAL++APTRELA Q+ + + +G + GG +
Sbjct: 50 TGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQD 109
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ IR L+ HV+VGTPGR+ D
Sbjct: 110 IERQIRALKKHPHVIVGTPGRIID 133
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R L + VLDEADEML+ GF + I + + A+ Q +L SATMPD + ++
Sbjct: 135 INRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIA 193
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 71.7 bits (168), Expect = 2e-11
Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGT 432
TGKTA F++ ILQ + I QALILAPTRELA Q+ + L + N GG
Sbjct: 54 TGKTAAFALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQ 113
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++QL G VVVGTPGR+ D
Sbjct: 114 EYGRQLKQLRSGAQVVVGTPGRILD 138
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I + L N +K F+LDEADEML GF + + + + L Q+ L SATMP + +++
Sbjct: 140 IDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIA 198
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I ++++I+ QA+++APTRELA Q+ + + +G AK GG +
Sbjct: 51 TGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQD 110
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ IR L+ +++VGTPGR+ D
Sbjct: 111 IGRQIRALKKNPNIIVGTPGRLLD 134
Score = 52.8 bits (121), Expect = 9e-06
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I RR + N + V+DEADEML+ GF D I + + ++ Q +L SATMP + ++
Sbjct: 136 INRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIA 194
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 71.3 bits (167), Expect = 2e-11
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F++ +L ++D +++ Q L+LAPTRELA Q+ + +L GG
Sbjct: 92 TGKTAAFALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQ 151
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ +RQL G HV+VGTPGRV D
Sbjct: 152 SMVVQLRQLARGAHVIVGTPGRVMD 176
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R++L+ +++ VLDEADEML GF D + + + A+ Q L SATMPD + V+
Sbjct: 178 IERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALFSATMPDAIRRVA 236
>UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG425
homolog; n=4; Mycoplasma|Rep: Probable ATP-dependent RNA
helicase MG425 homolog - Mycoplasma pneumoniae
Length = 450
Score = 71.3 bits (167), Expect = 2e-11
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
SP TGKTA F I +++ + S Q L++APTRELA+QI+ I H + K +
Sbjct: 47 SPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINFAKHTHLKVVS 106
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IGG + + ++QLE +VVGT GRV D
Sbjct: 107 LIGGIPIWQQLKQLENQPEIVVGTMGRVMD 136
Score = 36.3 bits (80), Expect = 0.82
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R + ++ ++DE D ML RGFK ++ D+ + Q+ + SA+ ++ +E ++
Sbjct: 138 LERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEKFEQIAVYSASYNEETIETAK 197
>UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellular
organisms|Rep: ATP-dependent RNA helicase - Bdellovibrio
bacteriovorus
Length = 505
Score = 70.9 bits (166), Expect = 3e-11
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA FS+ ILQ + R+ + LIL PTRELA QI + + A HLN K
Sbjct: 52 TGKTAAFSLPILQNLSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVI 111
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG +R L+ GV +++ TPGR+ D
Sbjct: 112 FGGVGQNPQVRALQGGVDILIATPGRLMD 140
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
++ L + +++FVLDEAD ML GF I + +L + SATMP ++
Sbjct: 144 QKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRHNLFFSATMPHEI 196
>UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28;
Alphaproteobacteria|Rep: Cold-shock dead-box protein A -
Bradyrhizobium japonicum
Length = 650
Score = 70.5 bits (165), Expect = 4e-11
Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALGDHLN 402
S+ +GKT + +++ + + I + ALI+APTRELA Q+Q+ + L +H +
Sbjct: 42 SAQTGSGKTLAYGLALAKDLLDGIERFERAGAPLALIVAPTRELALQVQRELAWLYEHAD 101
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +C+GG + R + R+L G H+VVGTPGR+ D
Sbjct: 102 GRVVSCVGGMDPRREQRELAAGAHIVVGTPGRLCD 136
Score = 41.5 bits (93), Expect = 0.022
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R L + +K VLDEADEML+ GF++ + + + + +L SAT P ++ +++
Sbjct: 138 LRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRRTLLFSATFPRGIVALAK 197
>UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2;
Treponema|Rep: ATP-dependent RNA helicase - Treponema
pallidum
Length = 649
Score = 70.5 bits (165), Expect = 4e-11
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F + ++Q++ + AL+L PTRELA Q+ + +L + H GG +
Sbjct: 95 TGKTAAFGLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVS 154
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ E +R LE G ++VGT GRV D
Sbjct: 155 IAEQLRNLEQGGEIIVGTTGRVID 178
Score = 56.8 bits (131), Expect = 5e-07
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R +L + ++ F+LDEADEML+ GF + I +F + D +V++ SATMP +L ++
Sbjct: 180 IERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIA 238
>UniRef50_Q1VPX9 Cluster: ATP-independent RNA helicase; n=9;
Bacteroidetes|Rep: ATP-independent RNA helicase -
Psychroflexus torquis ATCC 700755
Length = 443
Score = 70.5 bits (165), Expect = 4e-11
Identities = 40/105 (38%), Positives = 58/105 (55%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
SP TGKT FS+ +L +D + Q LIL P+RELA QI++V+ +G K +A
Sbjct: 41 SPTGTGKTLAFSLPLLTILDPESPDVQVLILVPSRELAIQIEQVIRTMGS--GYKVNAVY 98
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYDR*LVVRFMPTPSNFLFL 558
GG V +D +++ +++GTPGR+ D RF T L L
Sbjct: 99 GGRPVSKDKIEIKHNPAILIGTPGRILDHFNSERFSKTSIQTLIL 143
>UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: DEAD/DEAH box
helicase domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 422
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
TGKT F + +Q + T R+ +ALIL PTRELA QI + ++ + + +GG
Sbjct: 50 TGKTLAFLLPTIQLLSTEPRQPGVRALILTPTRELALQINEALLQIARGTGIRAAVAVGG 109
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
N R +R + G ++VV TPGR+YD
Sbjct: 110 LNERSQLRDIRGGANIVVATPGRLYD 135
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
++R ++ T+++ +LDE+D ML GF I + + A+ Q +L SAT+ V ++
Sbjct: 137 MSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQTLLFSATLESSVKQL 194
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I +++++D + QAL+L PTRELA Q+ + +L + GG +
Sbjct: 51 TGKTAAFGIPLIERLDEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVS 110
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ IR L+ V +VVGTPGR+ D
Sbjct: 111 IGNQIRALKRRVDLVVGTPGRIID 134
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R L IK V+DEADEML GF + + + + + Q+++ SATMP ++ ++R
Sbjct: 136 LNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQILMFSATMPQRIVTLAR 195
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 70.1 bits (164), Expect = 5e-11
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKT FS+ L+ ID + Q LILAPTRE+A QIQ + A+G + + H IGGT
Sbjct: 14 TGKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEMEGLRSHVFIGGT 73
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
D ++L+ H+ VGTPGR+
Sbjct: 74 LFGPDRQKLKK-CHIAVGTPGRI 95
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD 668
I L TI+LFVLDEAD++L F++Q++ ++ LS + Q++ LSAT P+
Sbjct: 99 IEYEVLKTGTIRLFVLDEADKLLDDTFQEQVNWIYNHLSDNKQMLALSATYPE 151
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 70.1 bits (164), Expect = 5e-11
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F++ ++QQ I R +A+IL+PTRELA QI + ++ G L
Sbjct: 151 TGKTAAFALPLIQQLLMNPIAIKGRSARAIILSPTRELALQIHEAFVSFGKRLPLNFTHA 210
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IGG +R+ +R L GV ++V TPGR+ D
Sbjct: 211 IGGAPIRKQMRDLSKGVDILVATPGRLED 239
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ ++ L + K VLDEAD+ML GF + + ++ D Q +L SATM ++ +++
Sbjct: 241 VDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQTLLFSATMSKEIKKLT 299
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 70.1 bits (164), Expect = 5e-11
Identities = 33/84 (39%), Positives = 50/84 (59%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F + IL++++ QALI+ PTRELA QI L + A GG +
Sbjct: 51 TGKTLAFILPILERVNVEKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQD 110
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
V + +R+L+ +H+++GTPGR+ D
Sbjct: 111 VEQQLRKLKGSIHIIIGTPGRLLD 134
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ R+ ++ + + VLDEAD+ML GF + D+ + Q + SATMP+ V
Sbjct: 136 LRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFSATMPNQV 190
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 70.1 bits (164), Expect = 5e-11
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
+GKTA FS+ +LQ +D ++ Q L+LAPTRELA Q+ + + H+ A GG
Sbjct: 54 SGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQ 113
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+R L G +VVGTPGR+ D
Sbjct: 114 RYDVQLRALRQGPQIVVGTPGRLLD 138
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R L + + VLDEADEML GF + + + + Q L SATMP+ + ++R
Sbjct: 140 LKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITR 199
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 69.7 bits (163), Expect = 7e-11
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHAC 420
+P +GKTA F + +LQ++D ++ QAL+L PTRELA Q+ K + L + N K
Sbjct: 70 APTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVL 129
Query: 421 IGGTNVREDIRQLE-XGVHVVVGTPGRVYD 507
GG + + LE HVVVGTPGR+ +
Sbjct: 130 TGGMPLGPQLASLEAHDPHVVVGTPGRIQE 159
Score = 50.0 bits (114), Expect = 6e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+RALH ++ VLDEAD ML GF++ I ++ Q +L SAT PD + ++R
Sbjct: 163 KRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLAR 220
>UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=1; Hyphomonas neptunium ATCC 15444|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family -
Hyphomonas neptunium (strain ATCC 15444)
Length = 708
Score = 69.7 bits (163), Expect = 7e-11
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI----DTSIRECQA---LILAPTRELAQQIQKVVIALGDHL 399
S+ +GKT F ++I ++ DT + LI+APTRELA Q+ + + L +
Sbjct: 43 SARTGSGKTVAFGLAIANELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRWLYANT 102
Query: 400 NAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
NA+ C+GG ++R++ R LE G H+VVGTPGR+ D
Sbjct: 103 NAEIATCVGGMDMRDERRALERGAHIVVGTPGRLVD 138
Score = 41.5 bits (93), Expect = 0.022
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I R + + I+ VLDEADEML GF++++ + + + + ++ SAT+P +
Sbjct: 140 INRGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKERRTLMFSATVPKGI 194
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 69.7 bits (163), Expect = 7e-11
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK--CHACIGG 429
TGKTA F + +L ID + QALIL+PTREL QQI+K + +++ + A GG
Sbjct: 51 TGKTAAFGLPVLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGG 110
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
+ + L+ H+V+ TPGR+ D
Sbjct: 111 EKIDRQMNNLKRTTHIVIATPGRLID 136
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILLSATMPDDVLEV 683
I R A+ + +K +LDEADEMLS GFK ++ + K + +D + L SATMPD++ +
Sbjct: 138 IERGAVDISHVKTVILDEADEMLSMGFKQDLNRILKFTTKSDRKTWLFSATMPDEIKRI 196
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 69.7 bits (163), Expect = 7e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F+I IL ++ A ILAPTRELAQQI++ +LG + + +GG N
Sbjct: 129 SGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMN 188
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ + R L H+++ TPGR+ D
Sbjct: 189 MMDQARDLMRKPHIIIATPGRLMD 212
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 69.3 bits (162), Expect = 9e-11
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F I L+ ID I Q +ILAPTRE+A QI++V+ +LG + K + IGG
Sbjct: 72 TGKTAVFGIIALEMIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIKGLKVESFIGGV 131
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+ D ++L H+ +G PGRV
Sbjct: 132 AMDIDRKKLS-NCHIAIGAPGRV 153
Score = 43.2 bits (97), Expect = 0.007
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I + L + ++LFVLDEAD+++ F+ I+ ++ L + QVI SAT P D+
Sbjct: 157 IDKGYLKMDHVRLFVLDEADKLMEESFQKDINYIYAKLPPNRQVISSSATYPGDL 211
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 69.3 bits (162), Expect = 9e-11
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F + +L ID S + QAL+LAPTRELAQQ+ + GG++
Sbjct: 103 TGKTAAFGLPLLNNIDFSKKCVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSS 162
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ + L G VVVGTPGR+ D
Sbjct: 163 YQAQVGGLRRGARVVVGTPGRLLD 186
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I + +L + +K VLDEADEMLS GF D I + D Q +L SAT+ V+ ++
Sbjct: 188 IRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFSATLSSRVMSIA 246
>UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=1;
Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: Superfamily II DNA and RNA helicase -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 431
Score = 69.3 bits (162), Expect = 9e-11
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+P TGKT F + +L +IDT+++ Q LILAP++ELA Q +V G+ + A + I
Sbjct: 37 APTGTGKTLAFVLPVLSRIDTNLKRTQVLILAPSQELAMQTTQVAREWGNAVGASVASLI 96
Query: 424 GGTNVREDIRQLEXG-VHVVVGTPGRV 501
GG N R +++ H+VVGT GRV
Sbjct: 97 GGANGRRQADKIKKDKPHIVVGTLGRV 123
Score = 33.5 bits (73), Expect = 5.8
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
L + I + DEAD ML+ D +H++ L + +Q+ L SAT D+ VS
Sbjct: 132 LKLDHIATVIFDEADAMLTEERHDSLHELADKLPSHIQLGLFSATSGVDLNYVS 185
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 69.3 bits (162), Expect = 9e-11
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA FS+ +L +IDT+ + QAL+L PTRELA Q+ + + N GG
Sbjct: 53 TGKTAAFSLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGA 112
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++R +R L+ V+VGTPGRV D
Sbjct: 113 DMRNQLRALKQNPQVIVGTPGRVMD 137
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ R L + +K VLDEADEML GF + I + + D Q L SATMP + ++
Sbjct: 139 LRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFSATMPHQIKRIT 197
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 69.3 bits (162), Expect = 9e-11
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F++ +L +ID ++ E Q L+LAPTRELA Q+ + N GG
Sbjct: 72 TGKTAAFALPLLSRIDANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQ 131
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ IR L+ G V+VGTPGR+ D
Sbjct: 132 DFSPQIRGLKRGAQVIVGTPGRMLD 156
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ + L + +K VLDEADEML GF D + + Q L SATMP + +V++
Sbjct: 158 LRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQRALFSATMPPQIKKVAQ 217
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 69.3 bits (162), Expect = 9e-11
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F I +L+ ID+ QA+IL PTRELA Q+ + + L +L GG
Sbjct: 52 TGKTAAFGIPLLENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQ 111
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ I+ L+ GV +++GTPGRV D
Sbjct: 112 PIDRQIKALQKGVQIIIGTPGRVMD 136
Score = 54.0 bits (124), Expect = 4e-06
Identities = 24/60 (40%), Positives = 39/60 (65%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R L N IK +LDEADEML GF++ I + + + + Q +L SAT+P ++L++++
Sbjct: 138 IDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLLFSATLPQEILQLAQ 197
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 68.9 bits (161), Expect = 1e-10
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGT 432
TGKT F + IL++ID + QALI+APTRELA QI ++ L + A GG
Sbjct: 53 TGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+V + +R+L+ H+VV TPGR+ D
Sbjct: 113 DVAQQLRKLKGNTHIVVATPGRLLD 137
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R + + + VLDEAD+ML GF I D+ Q +L SAT+P D+ ++++
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAK 198
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 68.9 bits (161), Expect = 1e-10
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 432
TGKTA F I +L++ID + +A+I+ PTRELA QI + + +L K GG
Sbjct: 67 TGKTAAFGIPLLERIDFKANKFVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQ 126
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ + + LE GV +VVGTPGR+ D
Sbjct: 127 SLEKQFKDLEKGVDIVVGTPGRIID 151
Score = 50.0 bits (114), Expect = 6e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R L + ++ VLDEAD ML GF D + ++ K + + L SATMP ++++++R
Sbjct: 153 LNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFLFSATMPKEIVDIAR 212
>UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;
Bigelowiella natans|Rep: Translation initiation factor
4A2 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 378
Score = 68.9 bits (161), Expect = 1e-10
Identities = 37/86 (43%), Positives = 48/86 (55%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
SP TGKT + I Q+ SI Q LIL PTREL+ QI+ V L + +C
Sbjct: 54 SPSGTGKTTCYIIGTSNQLCQSINSPQCLILVPTRELSIQIRNVFNVLNIYTKNSITSCH 113
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRV 501
GG + ED++ L+ H +VGTPGRV
Sbjct: 114 GGRWLGEDLKNLKKNFHGIVGTPGRV 139
Score = 47.2 bits (107), Expect = 4e-04
Identities = 20/48 (41%), Positives = 35/48 (72%)
Frame = +3
Query: 522 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+L I+ FVLDEAD ++++ FK I ++++ L++ VQ+I+ SAT+P
Sbjct: 147 SLAITKIRTFVLDEADILMNKNFKIDIFNIYRYLNSKVQIIICSATIP 194
>UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1;
Pseudoalteromonas atlantica T6c|Rep: DEAD/DEAH box
helicase-like - Pseudoalteromonas atlantica (strain T6c
/ BAA-1087)
Length = 458
Score = 68.5 bits (160), Expect = 2e-10
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
TGKTA F++ +LQ++ T ++ ++LI+ PTRELA Q+ V LN + A
Sbjct: 49 TGKTAAFTLPLLQRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVY 108
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + I QL+ GV V++ TPGR+ D
Sbjct: 109 GGVRIEPQIAQLQEGVDVLIATPGRLLD 136
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+RALH +++ V DEAD ML GF D + + +L Q +L SAT + +R
Sbjct: 140 QRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQTLLFSATFSKQIKHFAR 197
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 68.5 bits (160), Expect = 2e-10
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQID--TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
TGKTA F I I+++++ + R QALIL PTRELA Q++ + L A GG
Sbjct: 52 TGKTAAFGIPIIERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGG 111
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
+R + +L+ H+VVGTPGRV D
Sbjct: 112 KPLRSQMEKLKRAPHIVVGTPGRVID 137
Score = 49.6 bits (113), Expect = 8e-05
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+TRRAL ++ VLDEAD ML GF+ I + + + Q +LLSAT+P + ++++
Sbjct: 139 MTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLSATVPPTIEKLAQ 198
>UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 377
Score = 68.5 bits (160), Expect = 2e-10
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 414
TGKT+ F++++ Q +DTS RE QALI +PTRELA Q +KV++A+GD +N + H
Sbjct: 324 TGKTSMFALTVYQMVDTSNREVQALISSPTRELASQTEKVILAIGDSVNIQAH 376
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 6/55 (10%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQSELEKQ---LLSLYRFY---NKSIQAFVN 319
FEKPSA+QQRA++P IQG DVIAQAQS K L++Y+ N+ +QA ++
Sbjct: 296 FEKPSAVQQRAVLPIIQGHDVIAQAQSGTGKTSMFALTVYQMVDTSNREVQALIS 350
Score = 34.3 bits (75), Expect = 3.3
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 93 TDWDQVVETFDDMNLKEELLRGIYAYGLK 179
T+ +++ +FD M +K +LLRGIYAY +
Sbjct: 269 TEGVELIMSFDQMGIKNDLLRGIYAYSFE 297
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F+I ILQ++ + +LILAPTREL+ QI++ +I+LG + +GG +
Sbjct: 89 SGKTAAFTIPILQKLLEKPQRLFSLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLD 148
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ QL H++VG+PGR+ D
Sbjct: 149 MVSQALQLSKKPHIIVGSPGRIAD 172
Score = 41.5 bits (93), Expect = 0.022
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 537 TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
TIK VLDEAD++LS F D ++ + L D L SATM + ++ +
Sbjct: 184 TIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKVTYLYSATMTSKITKLQK 234
>UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1;
Idiomarina loihiensis|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 474
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGT 432
+GKT F++++L +++ QAL+L PTRELA Q+ V L LN K GG
Sbjct: 69 SGKTTAFALTLLAKLEAKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGE 128
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
R LE G HV+VGTPGRV D
Sbjct: 129 PSRIQTNSLEHGAHVLVGTPGRVLD 153
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ +R + + + VLDEAD ML GF+D ++ + K + Q +L SAT P ++
Sbjct: 155 LEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQTLLFSATYPKNI 209
>UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=2;
Clostridium difficile|Rep: Putative ATP-dependent RNA
helicase - Clostridium difficile (strain 630)
Length = 381
Score = 68.1 bits (159), Expect = 2e-10
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI--QKVVIALGDHLNAKCH 414
+S TGKT + + I ++IDTS RE QALILAPT EL QI Q ++A L+
Sbjct: 45 NSQTGTGKTLAYLLPIFEKIDTSKRETQALILAPTHELVMQITNQVELLAKNAELSVTSL 104
Query: 415 ACIGGTNVREDIRQLE-XGVHVVVGTPGRVYD 507
A IG N+++ I+ ++ H+V+G+ GRV D
Sbjct: 105 ALIGEVNIQKQIKNIKAVKPHIVIGSCGRVLD 136
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
I ++ L ++ IK VLDE D +L+ I D+ + D Q+I SA++ D +++
Sbjct: 138 IKQKKLKSHNIKTIVLDEVDNLLNGKNITCIEDIIRTTLRDRQIIGCSASLTDSTIKI 195
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
TGKT F+ ILQ++ I R ++LIL PTRELA QIQ+ A G HL + G
Sbjct: 49 TGKTCAFAAPILQRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFG 108
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G + + +L+ GV ++V TPGR+ D
Sbjct: 109 GVGQQPQVDKLKKGVDILVATPGRLLD 135
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+++FVLDEAD ML GF + V K+L A Q + SATMP +V+++
Sbjct: 147 LEIFVLDEADRMLDMGFLHDVRRVLKLLPAVKQTLFFSATMPPEVMDL 194
Score = 37.5 bits (83), Expect = 0.35
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 146 IVERHIRLWFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
I++ L +EKPS IQ++AI P + GRDV+ AQ+
Sbjct: 12 ILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQT 47
>UniRef50_A3J7I3 Cluster: ATP-independent RNA helicase; n=5;
Bacteroidetes|Rep: ATP-independent RNA helicase -
Flavobacteria bacterium BAL38
Length = 463
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/88 (36%), Positives = 51/88 (57%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
SP +GKT F + I Q ++ ++ Q LIL P+REL QI++V +G H K + C
Sbjct: 40 SPTGSGKTLAFLLPIFQMMEEEVKGVQCLILVPSRELGLQIEQVWKKMGTHF--KVNTCY 97
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++ + + L +++GTPGR+ D
Sbjct: 98 GGHSIETEFKNLSNPPALLIGTPGRIAD 125
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKT FS L + Q LILAPTRE+A QI V+ A+G + +CH IGGT
Sbjct: 111 TGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGT 170
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+ +D +L+ H+ VG+PGR+
Sbjct: 171 PLSQDKTRLKK-CHIAVGSPGRI 192
Score = 46.4 bits (105), Expect = 8e-04
Identities = 21/49 (42%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRG-FKDQIHDVFKMLSADVQVILLSATMPD 668
L+ +I+LF+LDEAD++L G F++QI+ ++ L A Q++ +SAT P+
Sbjct: 201 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPE 249
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 67.7 bits (158), Expect = 3e-10
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F I ++Q DT ++ QAL+L PTREL Q+ + +G ++ K GG
Sbjct: 51 TGKTAAFGIPLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGA 110
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ +L G VVV TPGR++D
Sbjct: 111 SIVSQTEELRKGAQVVVATPGRLHD 135
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R A+ + + VLDEADEML GF+D+++ + + +L SATMP +V ++
Sbjct: 137 IRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLLFSATMPREVAAIA 195
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 67.7 bits (158), Expect = 3e-10
Identities = 41/93 (44%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C + TGKTA F + IL + + ALILAPTRELA QI+ +LN +
Sbjct: 12 CLIQAKTGTGKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRDFARYLNVRT 68
Query: 412 HACIGGTNVREDIRQLEXG-VHVVVGTPGRVYD 507
A GGT V D++ L G V VV+GTPGR+ D
Sbjct: 69 FAFYGGTKVFGDLKVLRGGKVDVVIGTPGRIKD 101
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R AL + ++ FVLDE D ML FK+ I ++ L + QV +SAT P +V E+S
Sbjct: 103 IERGALKTDDVRYFVLDEVDVMLDMNFKEDIDFIYSQLPEEKQVFFVSATFPKEVRELS 161
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/88 (40%), Positives = 50/88 (56%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S +GKTA F+I I Q +D + QAL+L PTRELA Q+++ + +G K A
Sbjct: 48 SQTGSGKTAAFAIPICQLVDWDENKPQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVY 107
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
G ++L+ HVVVGTPGR+ D
Sbjct: 108 GKAPFYHQEKELKQKTHVVVGTPGRIID 135
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
IK V+DEADEM + GF DQI + K LS +LLSATMP + +S
Sbjct: 147 IKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTMLLSATMPSAIETLS 195
>UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Clostridiales|Rep: DEAD/DEAH box helicase domain
protein - Desulfotomaculum reducens MI-1
Length = 438
Score = 67.7 bits (158), Expect = 3e-10
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH--LNAKCHA 417
S +GKT + + I Q+ID+S RE QALILAPT EL QI K + L + L
Sbjct: 47 SQTGSGKTLAYLLPIFQKIDSSKRETQALILAPTHELVMQIDKQIKTLSSNAGLTINSTV 106
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IG N+ I +L+ H++VG+ GRV +
Sbjct: 107 MIGEVNIVRQIEKLKEKPHIIVGSTGRVLE 136
Score = 38.3 bits (85), Expect = 0.20
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R+ + ++TIK V+DEAD +L + + DV K D Q+++ SA M + S+
Sbjct: 138 IKRKKISSHTIKTIVIDEADMLLDQNNLAGVKDVIKTTMRDRQLMIFSAYMNQRAMAESK 197
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKT FS L + Q LILAPTRE+A QI V+ A+G + +CH IGGT
Sbjct: 110 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGT 169
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+ +D +L+ H+ VG+PGR+
Sbjct: 170 PLSQDKTRLKK-CHIAVGSPGRI 191
Score = 46.4 bits (105), Expect = 8e-04
Identities = 21/49 (42%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRG-FKDQIHDVFKMLSADVQVILLSATMPD 668
L+ +I+LF+LDEAD++L G F++QI+ ++ L A Q++ +SAT P+
Sbjct: 200 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPE 248
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKT FS L+ ++T+ Q LIL PTRE+A QI+ V+ ++G H+N K + IGG
Sbjct: 72 TGKTLVFSTIALETVNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVNGLKIESFIGGR 131
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+ +D+++ H+ VG PGRV
Sbjct: 132 PLEDDLKKSSK-CHIAVGAPGRV 153
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/51 (41%), Positives = 34/51 (66%)
Frame = +3
Query: 522 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
AL N +KLFVLDEAD+++ F+ I++++ L Q+I+ SAT P ++
Sbjct: 161 ALTTNLVKLFVLDEADKLMEESFQSDINEIYNSLPPRKQMIVSSATYPQEL 211
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 67.3 bits (157), Expect = 4e-10
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Frame = +1
Query: 235 YRSSPVRTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHL 399
+ ++ TGKTA FS+ ++QQ+ S + +ALI APTRELA+QI + A +
Sbjct: 42 FATAQTGTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYT 101
Query: 400 NAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRV 501
N A GG + R LE GV ++V TPGR+
Sbjct: 102 NLSVAAIFGGRKMSSQERMLENGVDILVATPGRL 135
Score = 34.3 bits (75), Expect = 3.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I+ V DEAD +L GF + + + + + Q+++ SAT + E+S+
Sbjct: 149 IEFLVFDEADRILDMGFINAVRKIMLDVETNPQIMMFSATTSSQLNELSK 198
>UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3;
Rhodospirillales|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 731
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI---DTSIRECQA---LILAPTRELAQQIQKVVIALGDHLN 402
S+ +GKT + +++ + D + + A LI+APTRELA Q+Q+ ++ L
Sbjct: 86 SAQTGSGKTVAYGLALADTLLGADERLGQAGAPLALIVAPTRELAMQVQQELLWLYGPAG 145
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
A+ +CIGG + R + + LE G H+VVGTPGR+ D
Sbjct: 146 ARVVSCIGGMDARREAQALERGCHIVVGTPGRLCD 180
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R L+ + ++ VLDEADEML GF+D++ ++ A+ + +L SAT+ ++ +++
Sbjct: 184 RGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERRTLLFSATIAREIAALAK 241
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 67.3 bits (157), Expect = 4e-10
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA+F++ IL +ID QAL+LAPTRELA Q+ + ++ GG
Sbjct: 55 TGKTASFALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQ 114
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ + L GVHVVVGTPGRV D
Sbjct: 115 SYGAQLSALRRGVHVVVGTPGRVID 139
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ + +L + IK VLDEADEML GF D + + + Q L SATMP + ++
Sbjct: 141 LEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALFSATMPSAIKRIA 199
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 432
TGKTA F + ILQ++ R +A+I+ PTRELA+QIQ V+ ALG + + GG
Sbjct: 49 TGKTAAFVLPILQRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGV 108
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ I++L GV + V PGR+ D
Sbjct: 109 GYQGQIQRLRRGVEIAVVCPGRLLD 133
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R L + + +LDEAD+M GF + + ++ A Q +L SATMPD + ++R
Sbjct: 135 LERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTMLFSATMPDAIRALAR 194
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/88 (40%), Positives = 48/88 (54%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S +GKTA F +SILQ + Q LIL P RELA Q+ + + +L K A
Sbjct: 47 SKTGSGKTAVFGVSILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIY 106
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
G N+ + + L GV +V GTPGRV+D
Sbjct: 107 GQHNINLETQILNKGVSIVTGTPGRVFD 134
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I+ L I+ VLDEAD ML GF DQ+ + K L + +L SATMP ++ + +
Sbjct: 136 ISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLLFSATMPPEIHNICK 195
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/84 (42%), Positives = 48/84 (57%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F + ILQ++ + ALILAPTREL QI + ++A+G L +GG +
Sbjct: 99 SGKTAAFGLPILQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLD 158
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
L HVVVG+PGRV D
Sbjct: 159 HNTQAIALAKKPHVVVGSPGRVVD 182
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
+GKTA F + +LQQID S+ + QAL+L PTRELA Q+ + L L N K GG
Sbjct: 51 SGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQ 110
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
L+ H++V TPGR+ D
Sbjct: 111 PFGMQRDSLQHAPHIIVATPGRLLD 135
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ + V+DEAD ML GF D I DV + A Q +L SAT P+ + +S
Sbjct: 145 DALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAIS 195
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 66.9 bits (156), Expect = 5e-10
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S +GKTAT +I I +++T + + QALI+ PTRELA Q +G + K A
Sbjct: 59 SQTGSGKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGKYKGVKAFAIF 118
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + +L+ GV V+V TPGR+ D
Sbjct: 119 GGEDSALQQSKLKHGVQVLVATPGRLID 146
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R + + ++ +LDEADEMLS GF D + + + L+ Q +L SATMP + +++
Sbjct: 148 IYSRQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLLFSATMPAAIQRLAK 207
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 66.9 bits (156), Expect = 5e-10
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F + IL++ S + QAL+LAPTRELA Q+ + L + GGT+
Sbjct: 53 SGKTAAFGLPILERCQPS-GKLQALVLAPTRELANQVAQEFELLQGNAGLSIVTVYGGTD 111
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ + + L GV ++VGTPGRV D
Sbjct: 112 LEKQAKTLAKGVDIIVGTPGRVMD 135
Score = 41.5 bits (93), Expect = 0.022
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
R + N+ K+ LDEAD ML GF I + + +++ Q +L SAT P ++++ +
Sbjct: 139 RGHIDLNSPKMLCLDEADRMLDMGFFPDIMWIVERMTSRQQTLLFSATFPQEIIDAA 195
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGT 432
TGKTA F ++Q+ID + R QALIL+PTREL QI + + A GG
Sbjct: 51 TGKTAAFGFPVIQKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGA 110
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ E R ++ G ++V TPGR+ D
Sbjct: 111 SITEQARDIKRGAQIIVATPGRMQD 135
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I RR + + I +LDEADEML+ GF + I ++ + L SATMP +V + +
Sbjct: 137 INRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEKNTWLFSATMPAEVARIGK 196
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 66.9 bits (156), Expect = 5e-10
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F + +L +I+ +I Q LILAPTRELA Q+ + V + GG
Sbjct: 60 TGKTAAFVLPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQ 119
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ +R L+ GVH +VGTPGRV D
Sbjct: 120 SYDIQLRPLKRGVHAIVGTPGRVMD 144
Score = 52.0 bits (119), Expect = 2e-05
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I ++ L + +K FVLDEADEML GF D I + + + Q+ L SATMP+ + ++++
Sbjct: 146 IEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFSATMPNVIKKIAK 205
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 66.9 bits (156), Expect = 5e-10
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQ--IDTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNA-KCHA 417
+GKTA F+I +LQ + IR AL+LAPTRELAQQI+K V A L + K
Sbjct: 166 SGKTAAFTIPMLQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCI 225
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GGTN+ + +L GV + V TPGR D
Sbjct: 226 VVGGTNIEKQRSELRAGVEIAVATPGRFID 255
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I VLDEAD ML GF+ QI ++ + L Q +L SATMP ++
Sbjct: 267 ISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEI 311
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 66.9 bits (156), Expect = 5e-10
Identities = 28/60 (46%), Positives = 42/60 (70%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R LH +++ +F+LDEAD+ML GF++ I D+F+ D Q IL SATMP +L+++R
Sbjct: 139 IKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSATMPQPILDITR 198
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F I I++++D + QAL+L+PTRELA Q + L + GG
Sbjct: 53 TGKTAAFGIPIIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQ 112
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ +R L+ V VV+GTPGRV D
Sbjct: 113 PIERQLRALKGTVQVVIGTPGRVID 137
>UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;
n=1; uncultured marine bacterium 66A03|Rep: Putative
cold-shock dead-box protein A - uncultured marine
bacterium 66A03
Length = 659
Score = 66.5 bits (155), Expect = 7e-10
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALGDHLN 402
S+ +GKT F ISI + E A+I+APTRELA Q++K + L
Sbjct: 43 SAQTGSGKTLAFGISIATTLLAEKMEFDRPKIPLAIIIAPTRELALQVRKELEWLYVRTK 102
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
A+ +C+GG + R + R LE G H+VVGTPGR+ D
Sbjct: 103 AQFASCVGGMDPRAERRTLESGAHIVVGTPGRLRD 137
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R L + IK VLDEADEML GF++ + + + + +L SAT+P ++++++
Sbjct: 139 IERGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVERRTLLFSATVPTQIVKLAK 198
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 66.5 bits (155), Expect = 7e-10
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
TGKTA FS+ +LQ+I AL+L PTRELA Q+ + + G L G
Sbjct: 84 TGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYG 143
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G + + +R L+ GV VVV TPGR D
Sbjct: 144 GQVISQQLRVLKRGVDVVVATPGRALD 170
Score = 43.2 bits (97), Expect = 0.007
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ R+ L +++ VLDEADEML GF + + + Q L SAT+P + ++
Sbjct: 172 LQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTALFSATLPPRIASIA 230
>UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Algoriphagus sp. PR1|Rep: DEAD/DEAH box helicase-like
protein - Algoriphagus sp. PR1
Length = 399
Score = 66.5 bits (155), Expect = 7e-10
Identities = 34/84 (40%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKT F I I++ + + ALI+ PTRELA QI + +L + IGGTN
Sbjct: 103 SGKTGAFLIPIIEHALKNPGQFTALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTN 162
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ D++ L +HV+VGTPGR+ D
Sbjct: 163 INTDMKVLSRKLHVIVGTPGRLLD 186
Score = 36.7 bits (81), Expect = 0.62
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 662
R+ L N +K VLDE D ML GF + + + ++ Q +L SAT+
Sbjct: 190 RKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQREQTMLFSATL 238
>UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 441
Score = 66.5 bits (155), Expect = 7e-10
Identities = 35/90 (38%), Positives = 48/90 (53%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C S TGKTA F++ I+ + AL+++PTRELAQQI + G +NA
Sbjct: 43 CIVISQTGTGKTAAFALPIISTLSKDPYGIYALVISPTRELAQQICQQFKIFGRGMNADI 102
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRV 501
IGG + + LE H+VV TPGR+
Sbjct: 103 CPIIGGLAITDQASALEKNPHIVVATPGRI 132
Score = 33.9 bits (74), Expect = 4.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ ++ VLDE D + G+ D + ++ K L Q + SAT D V
Sbjct: 149 DNLQYLVLDEVDRLFKDGYWDDVLEIIKYLPEKRQTLCFSATKSDQV 195
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 66.5 bits (155), Expect = 7e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I +++ I + + Q L++ PTRELA Q+ + + +G + A GG +
Sbjct: 50 TGKTAAFGIPMVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQD 109
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
R ++ LE H+VVGTPGR+ +
Sbjct: 110 FRSQVKALEELPHIVVGTPGRLLE 133
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R + + I++ VLDEAD+ML GF D+ + K L Q +L SAT+ V ++R
Sbjct: 137 REYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLLFSATLSPPVQMLAR 194
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 66.5 bits (155), Expect = 7e-10
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKT F+ L + Q L+LAPTRE+A QI VV+A+G + +CH IGG
Sbjct: 74 TGKTCVFTTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGR 133
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+ +D + L+ H+ +G+PGR+
Sbjct: 134 PISQDKQHLKK-CHIAIGSPGRI 155
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Frame = +3
Query: 522 ALHANTIKLFVLDEADEML----SRGFKDQIHDVFKMLSADVQVILLSATMPDDVL-EVS 686
AL ++I+LFVLDEAD++L S F++QI+ ++ L A+ Q++ LSAT P+ + ++S
Sbjct: 163 ALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIYSSLPANKQMLALSATYPESLAQQLS 222
Query: 687 RCL*EILYAYL 719
R + E + L
Sbjct: 223 RYMREPTFVRL 233
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 66.1 bits (154), Expect = 9e-10
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F++ +LQ++ S + L+L PTRELA+Q+ + IA G L+ + A
Sbjct: 49 TGKTAGFALPLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAA 108
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++ + +L GV V+V TPGR+ D
Sbjct: 109 YGGVSINPQMMKLRKGVDVLVATPGRLLD 137
Score = 46.4 bits (105), Expect = 8e-04
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ A+ + ++ VLDEAD ML GF +++ VF L A Q +L SAT DD+
Sbjct: 141 QNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSATFSDDI 193
>UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2;
Desulfitobacterium hafniense|Rep: DEAD/DEAH box
helicase-like - Desulfitobacterium hafniense (strain
DCB-2)
Length = 425
Score = 66.1 bits (154), Expect = 9e-10
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKTA F+I ILQ + R+ +AL+LAPTRELA QI + A G +L +
Sbjct: 49 TGKTAAFAIPILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLV 108
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG R+LE G+ ++V TPGR+ D
Sbjct: 109 IFGGVGQAPQTRKLEKGIDILVATPGRLLD 138
Score = 36.7 bits (81), Expect = 0.62
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
++ FVLDE D+ML G + + L + Q +L SATMP ++
Sbjct: 150 VEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSATMPVEI 194
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 66.1 bits (154), Expect = 9e-10
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +1
Query: 223 RTRCYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD-HL 399
RT S TGK+ F + ++Q ID+ I+E QA+++APTRELAQQ+ L
Sbjct: 41 RTNLIGQSQTGTGKSHAFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKA 100
Query: 400 NAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IGGT++ +D ++ +++GTP R+ D
Sbjct: 101 GVSVKVFIGGTDIEKDRQRCNAQPQLIIGTPTRIND 136
>UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Blastopirellula marina DSM 3645
Length = 447
Score = 66.1 bits (154), Expect = 9e-10
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQID---TSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F++ IL Q+D + C Q L+L+PTRELA QI + G ++ +
Sbjct: 44 TGKTAAFALPILNQLDLDRSRADACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTI 103
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG +R L+ GVHV + TPGR+ D
Sbjct: 104 FGGVGQNPQVRALKRGVHVAIATPGRLLD 132
Score = 41.1 bits (92), Expect = 0.029
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
K FVLDEAD ML GF + + L Q I +ATMP V +++
Sbjct: 145 KTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFFTATMPPKVAQLA 192
>UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Type III restriction enzyme, res subunit family protein
- Tetrahymena thermophila SB210
Length = 440
Score = 66.1 bits (154), Expect = 9e-10
Identities = 33/84 (39%), Positives = 46/84 (54%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTATF+ ILQ + A++L RELA QI + G LN + +GG +
Sbjct: 50 SGKTATFAFPILQDLAKDPFGVFAIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVD 109
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ + +LE H+VVGTPGR D
Sbjct: 110 FNKQLSELERIPHIVVGTPGRTLD 133
Score = 36.3 bits (80), Expect = 0.82
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 528 HANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDD 671
+ +K VLDEAD + + I + + + + Q+IL +AT+ DD
Sbjct: 144 YIENVKYLVLDEADRLFEDSIIEDIQSILEFIPQEKQIILATATINDD 191
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 66.1 bits (154), Expect = 9e-10
Identities = 35/84 (41%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F+I ILQ + + + A +LAPTRELA QI + V ALG + + +GG +
Sbjct: 152 SGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMD 211
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ L HV+V TPGR+ D
Sbjct: 212 MMSQSIALSKRPHVIVATPGRLQD 235
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 65.7 bits (153), Expect = 1e-09
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI----DTSIRECQ----ALILAPTRELAQQIQKVVIALGDH 396
S+ TGKTA F++ +L ++ +TS+ + ALI+APTRELA QI + V G +
Sbjct: 48 SAQTGTGKTAGFTLPLLYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKY 107
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L + GG N+ I L+ GV ++V TPGR+ D
Sbjct: 108 LALRTAVVFGGINIEPQIAALQAGVEILVATPGRLLD 144
Score = 41.1 bits (92), Expect = 0.029
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ ++A++ + ++ VLDEAD ML GF I V +LS Q ++ SAT ++ +++
Sbjct: 146 VEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQRQSLMFSATFSGEIRKLAD 205
Query: 690 CL 695
L
Sbjct: 206 SL 207
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 65.7 bits (153), Expect = 1e-09
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F + +L ++ Q LIL PTREL +Q+ K + L + N K + GG
Sbjct: 52 TGKTAAFGLGVLSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGM 111
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
R ++ + G H+VVGTPGR+
Sbjct: 112 PFRPQMKSVAHGAHIVVGTPGRI 134
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ + +L + ++ VLDEAD ML GF+D+I + + Q +L SAT P + +++
Sbjct: 138 LNKSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNKQRQTLLFSATYPKKIATIAK 197
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 65.7 bits (153), Expect = 1e-09
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 432
TGKTA +++ I+Q++ ++ R + L++APTRELA QI +LG + + GG
Sbjct: 49 TGKTAAYALPIIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGV 108
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
N+ + IR+L GV VVV PGR+ D
Sbjct: 109 NMDQQIRRLRSGVDVVVACPGRLLD 133
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R + ++ ++DEAD M GF+ I + K L Q +L SATMP +V +++
Sbjct: 135 IWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLT 193
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/88 (37%), Positives = 50/88 (56%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S +GKTA+F I + + ++ + QAL+L PTRELA Q+++ + +G K A
Sbjct: 48 SQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIY 107
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
G + +L+ H+VVGTPGRV D
Sbjct: 108 GKSPFARQKLELKQKTHIVVGTPGRVLD 135
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I + L +K V+DEADEML+ GF DQ+ + L +L SAT+P+DV +SR
Sbjct: 137 IEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSR 196
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 65.3 bits (152), Expect = 2e-09
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
TGKTA F++ +L ++ T QAL+L PTRELA Q+ + + G L A+ G
Sbjct: 105 TGKTAAFALPLLHRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYG 164
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G + +R L GV VVV TPGR D
Sbjct: 165 GAPIGRQVRALVQGVDVVVATPGRALD 191
Score = 42.7 bits (96), Expect = 0.009
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R L + + VLDEADEML GF + I + + Q +L SAT+P + +++R
Sbjct: 195 RGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFSATLPPRMDQIAR 252
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA+F I IL ++ QAL+L PTRELA Q+ + + +L + + A GG +
Sbjct: 52 TGKTASFGIPILNRVIKG-EGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQS 110
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ +R L ++VGTPGR+ D
Sbjct: 111 IELQLRSLRRNPEIIVGTPGRLMD 134
Score = 48.0 bits (109), Expect = 3e-04
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+ R + + +K VLDEADEML GF I + + Q L SAT+PD+V E+
Sbjct: 136 MNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLFSATLPDEVREL 193
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 65.3 bits (152), Expect = 2e-09
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACI-G 426
TGKTA F++ ++ +D + R+ Q L+LAPTRELA Q+ + A ++ ACI G
Sbjct: 55 TGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYG 114
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G IR L+ GV VVVGT GRV D
Sbjct: 115 GQEYGSQIRALKQGVKVVVGTTGRVMD 141
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
I + L + ++ VLDEADEML GF D + V +S + Q +L SAT+P D+ ++
Sbjct: 143 IEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFSATIPTDIADI 200
Score = 37.5 bits (83), Expect = 0.35
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 146 IVERHIRLWFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
IV+ I+L +E P+ IQQ AI + GRDV+ QAQ+
Sbjct: 18 IVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQT 53
>UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 387
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
SP TGKT + I IL +ID + QA+ILAP+ ELA QI + + N I
Sbjct: 54 SPTGTGKTLAYLIPILHRIDPESKAVQAVILAPSHELAMQIHQTIEKWTKDNNISSEPLI 113
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG N++ I L+ ++V T GR+ +
Sbjct: 114 GGANIKRQIENLKKRPQIIVATTGRLLE 141
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 65.3 bits (152), Expect = 2e-09
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTATF ISI ++ + + +ALILAPTREL QI+K ALG + A
Sbjct: 49 TGKTATFLISIFTKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAI 108
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + + L+ G +V+GTPGR+ D
Sbjct: 109 YGGVDYMKQRDALKAGADIVIGTPGRLID 137
>UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=1; Pseudoalteromonas tunicata D2|Rep:
ATP-dependent RNA helicase, DEAD box family protein -
Pseudoalteromonas tunicata D2
Length = 416
Score = 65.3 bits (152), Expect = 2e-09
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +1
Query: 226 TRCYRSSPVRTGKTATFSISILQQ---IDTS---IRECQALILAPTRELAQQIQKVVIAL 387
T Y +P TGKTA + + LQ+ +D S +R +AL L PTRELA Q+++ +
Sbjct: 40 TDTYAIAPTGTGKTAAYLLPTLQELSRVDNSAEQVRPVRALFLVPTRELAVQVEESIAKY 99
Query: 388 GDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
G LN + + GG + + + + G +VV TP R+ D
Sbjct: 100 GKGLNLRTISVFGGVRIPSQVNRFKRGADIVVATPRRLVD 139
Score = 33.5 bits (73), Expect = 5.8
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 659
+A +K FV+DEAD ++S G ++ + + Q IL SAT
Sbjct: 144 KAFSLEQVKHFVMDEADRLVSMGIVAELRTILAAMPQAKQQILFSAT 190
>UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Deltaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Desulfovibrio vulgaris subsp. vulgaris
(strain DP4)
Length = 577
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/84 (39%), Positives = 46/84 (54%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKT F + +L+++D + QAL+L PTRELA Q++ L + + A GG
Sbjct: 85 SGKTGAFLLPLLERLDPAEASTQALVLVPTRELALQVEHEARTLFEGTGLRVAAVYGGVG 144
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ L G H VVGTPGRV D
Sbjct: 145 YGKQNDALREGAHFVVGTPGRVLD 168
Score = 36.3 bits (80), Expect = 0.82
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVILLSATMPDDVLEVS 686
+ RR + + ++ DEAD MLS GF + ++ + L + L SAT P VL ++
Sbjct: 170 LLRRTMQLDRLRALTFDEADRMLSIGFYPDMKEIQRYLPKRRIATCLFSATYPPHVLNLA 229
>UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqfR;
n=12; Bacillaceae|Rep: Probable ATP-dependent RNA
helicase yqfR - Bacillus subtilis
Length = 438
Score = 65.3 bits (152), Expect = 2e-09
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL-----GDHLNAK 408
S TGKT + + +L +ID + Q +I APTRELA QI + + + G + +K
Sbjct: 48 SQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSK 107
Query: 409 CHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C IGGT+ ++ I +L+ H+VVGTPGR+ D
Sbjct: 108 CF--IGGTDKQKSIDKLKIQPHLVVGTPGRIAD 138
Score = 38.7 bits (86), Expect = 0.15
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD 668
I +AL + + V+DEAD ML GF + + + D+Q+++ SAT+P+
Sbjct: 140 IKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFSATIPE 192
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 65.3 bits (152), Expect = 2e-09
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN-AKCHACIGGT 432
TGKTA F+I +L +ID + + QAL+L PTRELA Q+ + G +L+ GG+
Sbjct: 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ + L G VVVGTPGR+ D
Sbjct: 121 SYAVQLAGLRRGAQVVVGTPGRMID 145
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ R L + + VLDEADEML+ GF D + + QV L SATMP + ++S
Sbjct: 147 LERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLS 205
>UniRef50_Q88XN5 Cluster: ATP-dependent RNA helicase; n=2;
Lactobacillus|Rep: ATP-dependent RNA helicase -
Lactobacillus plantarum
Length = 444
Score = 64.9 bits (151), Expect = 2e-09
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+P +GKT F+ +L+ + QALILAP++ELA Q VV G ++AK A
Sbjct: 38 APTGSGKTLAFTWPMLEALRVG-EGTQALILAPSQELAMQTTNVVREWGQLIDAKVLAIT 96
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRV 501
GG NV+ + +L+ V+VGTPGR+
Sbjct: 97 GGANVKRQMEKLKKHPEVIVGTPGRI 122
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
+GKTA F I +L +I S QAL+L PTRELA Q+ K + L N K GG
Sbjct: 52 SGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQ 111
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ + + L H+VVGTPGR+ D
Sbjct: 112 PMGQQLDSLVHAPHIVVGTPGRIQD 136
Score = 54.0 bits (124), Expect = 4e-06
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ +++L +++K+ VLDEAD ML GF D I DV +D Q +L SAT P ++ ++S
Sbjct: 138 LRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPQEIEQIS 196
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGT 432
TGKTA F + L +ID S+++ Q L++ PTRELA Q+ + + + A + GG
Sbjct: 56 TGKTAAFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGA 115
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
++ L+ G +VVGTPGR+ D
Sbjct: 116 PFGPQVKALKQGTAIVVGTPGRLID 140
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ + L + +K+ VLDEADEML+ GF + I + K + Q L SATMP+ + ++++
Sbjct: 142 LNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALFSATMPNAIRKLAK 201
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATF---SISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F SI L++ D I + C+ L+LAPTREL QI G K +
Sbjct: 50 TGKTAAFMLPSIDRLREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSI 109
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GGT+V +D +L G +++ TPGR+ D
Sbjct: 110 VGGTSVNKDRNKLHRGTDILIATPGRLLD 138
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/58 (32%), Positives = 36/58 (62%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
I ++A + ++++ VLDEAD+ML GF + + +++ + Q + SATMP + E+
Sbjct: 140 IDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQTLFFSATMPKAIKEL 197
>UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;
n=7; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
36 - Oryza sativa subsp. japonica (Rice)
Length = 501
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/82 (43%), Positives = 47/82 (57%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F++ IL ++ AL LAPTRELA Q+ + ALG L +C A IGG +
Sbjct: 125 SGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFD 184
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
+ L HVVV TPGR+
Sbjct: 185 SLGQAKGLARRPHVVVATPGRI 206
Score = 35.5 bits (78), Expect = 1.4
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
K VLDEAD +L F++ + +F L Q L SAT+ D++
Sbjct: 224 KFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTFLFSATISDNL 267
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F+I I++++ + +AL+L PTRELA Q+++ + L + + GGT+
Sbjct: 48 TGKTGAFAIPIVEKLQKGKPDVKALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTS 107
Query: 436 VREDIRQLE-XGVHVVVGTPGRVYD 507
V++++ L+ V +++GTPGR+ D
Sbjct: 108 VKQNLDILQNKNVDILIGTPGRIKD 132
Score = 41.1 bits (92), Expect = 0.029
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I R+AL+ + ++ VLDE D+ML GF + I + L + + SAT+P +
Sbjct: 134 IDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKERTTYMFSATVPSRI 188
>UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole
genome shotgun sequence; n=2; Euteleostomi|Rep:
Chromosome undetermined SCAF9757, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 64.5 bits (150), Expect = 3e-09
Identities = 27/42 (64%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +3
Query: 57 DGPPGMDT-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGLK 179
+GP GMD G ++T+WD VV+ FDDMNLKE LLRG+YAYG +
Sbjct: 10 NGPEGMDPDGVIETNWDTVVDNFDDMNLKESLLRGVYAYGFE 51
Score = 64.1 bits (149), Expect = 4e-09
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 375
TGKTATF ISILQ+IDTS++E QALILAPTRELAQQ K+
Sbjct: 78 TGKTATFVISILQRIDTSLKETQALILAPTRELAQQEWKL 117
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQRAI+PCI+G DVIAQAQS
Sbjct: 50 FEKPSAIQQRAILPCIKGHDVIAQAQS 76
>UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacillus cereus group|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 389
Score = 64.5 bits (150), Expect = 3e-09
Identities = 29/88 (32%), Positives = 51/88 (57%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
SP TGKT + + +L +I+ +++ Q ++LAPTREL QI + V + I
Sbjct: 42 SPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLI 101
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG +++ + +L+ V+VG+PGR+ +
Sbjct: 102 GGADIKRQVEKLKKHPRVIVGSPGRILE 129
>UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=20; Bacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 436
Score = 64.5 bits (150), Expect = 3e-09
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL------GDHLNA 405
S +GKT + + L +I+ E Q +I APTRELAQQI + ++ L + A
Sbjct: 48 SQTGSGKTHAYLLPTLNRINPGREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITA 107
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+C IGGT+ + I +L+ H+VVGTPGR+ D
Sbjct: 108 RC--LIGGTDKQRSIEKLKKQPHIVVGTPGRIKD 139
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ +AL + ++DEAD ML GF + + + ++Q+++ SAT+P
Sbjct: 141 VEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSATIP 192
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
TGKTA+F++ I++++ + R +AL+LAPTRELA Q+ + G L + +
Sbjct: 52 TGKTASFALPIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVY 111
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG V I++L+ G ++V TPGR+ D
Sbjct: 112 GGVPVENQIKRLKRGTDILVATPGRLLD 139
Score = 39.9 bits (89), Expect = 0.066
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ ++A+ ++ VLDEAD ML GF D I + + D Q +L +AT + V
Sbjct: 141 LRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTLLFTATADESV 195
>UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Maricaulis maris (strain MCS10)
Length = 787
Score = 64.5 bits (150), Expect = 3e-09
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI---DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLN 402
S+ +GKTA F +++ + + D ALI+APTRELA Q+Q+ + L
Sbjct: 43 SAQTGSGKTAAFGMAMAKTLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAWLYGEAR 102
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +C+GG + R + + LE G H+VVGTPGR+ D
Sbjct: 103 GQIASCVGGMDPRAERKALERGCHIVVGTPGRLRD 137
Score = 48.0 bits (109), Expect = 3e-04
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R AL + +K VLDEADEML GF++ + + A + +L SAT+P + +++R
Sbjct: 139 IERGALDMSQLKAVVLDEADEMLDFGFREDLEYILDAAPASRRTLLFSATVPRAIADIAR 198
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 64.5 bits (150), Expect = 3e-09
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+P TGKT F I +++ ID QAL+LAPTRELA QIQ + L + C+
Sbjct: 56 APTGTGKTFAFGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCL 115
Query: 424 -GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + + I L+ +VV TPGR+ D
Sbjct: 116 YGGAPIEKQITTLKKHPQIVVATPGRLMD 144
Score = 38.3 bits (85), Expect = 0.20
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
RR + + ++ VLDEAD ML GF + + + + + L SAT+ +V+++S
Sbjct: 148 RRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGLFSATISREVMDIS 204
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/81 (40%), Positives = 48/81 (59%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F + I+Q+I+ +++ QALIL PTRELA Q+ + + + GG
Sbjct: 51 TGKTAAFGLPIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAP 110
Query: 436 VREDIRQLEXGVHVVVGTPGR 498
+ + R L+ GV +VV TPGR
Sbjct: 111 IMDQKRALKKGVDLVVATPGR 131
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +3
Query: 498 CI**ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 677
CI I L ++++ VLDEADEML+ GF + + V K D V++ SATMP +
Sbjct: 132 CIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMFSATMPPRLK 191
Query: 678 EVS 686
+++
Sbjct: 192 KIA 194
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 64.1 bits (149), Expect = 4e-09
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
TGKTA F + I+Q + R ALIL PTRELAQQ+ + +H + + GG
Sbjct: 55 TGKTAAFGLPIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGG 114
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
T++ +LE G +++ TPGR+ D
Sbjct: 115 TSIGVQKNKLEEGADILIATPGRLLD 140
Score = 36.7 bits (81), Expect = 0.62
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 546 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 659
+ VLDEAD ML GF + + + L D Q++L SAT
Sbjct: 154 VLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFSAT 191
>UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducible
ATP-independent RNA helicase; n=2;
Enterobacteriaceae|Rep: Cold-shock DEAD-box protein A,
inducible ATP-independent RNA helicase - Blochmannia
floridanus
Length = 487
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI--GG 429
+GKTA F + +LQ ID R Q LI+ PTRELA QI V + L+ + + GG
Sbjct: 54 SGKTAAFLLPLLQNIDIKQRFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGG 113
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
N R L+ H+++GTPGR+ D
Sbjct: 114 QNYRIQFNDLKKNPHIIIGTPGRLLD 139
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
R L + +K ++DEADEML GF + I + + + Q L SAT+P + ++S
Sbjct: 143 RGLDISKLKTLIIDEADEMLRMGFIEDIEHIIRYVPTHRQTALFSATLPVSIRKLS 198
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 64.1 bits (149), Expect = 4e-09
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAK 408
S+ TGKTA F + I++ + + + +L+L PTRELA Q++ A +L +
Sbjct: 67 SAQTGTGKTAAFILPIIELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALR 126
Query: 409 CHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
A GG ++R +++L+ GV ++V TPGR+ D
Sbjct: 127 SDAVFGGVSIRPQVKRLQGGVDILVATPGRLLD 159
Score = 37.9 bits (84), Expect = 0.27
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I ++ + + +K+ VLDEAD ML GF I V + L + Q ++ SAT + +++
Sbjct: 161 INQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQNMMFSATFSTPIKKLA 219
>UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=30;
cellular organisms|Rep: DEAD/DEAH box helicase-like
protein - Silicibacter sp. (strain TM1040)
Length = 710
Score = 64.1 bits (149), Expect = 4e-09
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI---DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLN 402
S+ +GKT F ++I I D + AL++APTRELA Q+++ + L
Sbjct: 45 SAQTGSGKTVGFGLAIAPTILGEDGTFERAASPLALVIAPTRELALQVKRELSWLYGDAG 104
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
A +C+GG ++R++ R LE G H+VV TPGR+ D
Sbjct: 105 AVLASCVGGMDMRDERRALERGAHIVVATPGRLRD 139
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
ITR ++ + + VLDEADEML GF++ + + + D Q +L SAT+ + +++
Sbjct: 141 ITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLFSATVSKPIAALAQ 200
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 64.1 bits (149), Expect = 4e-09
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIREC-----QALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA ++ IL Q+ + R+ AL+LAPTRELA QI A G HL +
Sbjct: 50 TGKTAALALPILNQLGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLI 109
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++ L+ G H++V TPGR+ D
Sbjct: 110 YGGVGQGNQVKALKRGAHILVATPGRLLD 138
Score = 40.7 bits (91), Expect = 0.038
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL 695
N +++FVLDEAD ML GF + + L Q + SAT+ + E++ L
Sbjct: 148 NQLEVFVLDEADRMLDMGFLPDLKRIITQLPTQRQSLFFSATLAPKITELAHSL 201
>UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Acidiphilium cryptum JF-5|Rep: DEAD/DEAH box
helicase domain protein - Acidiphilium cryptum (strain
JF-5)
Length = 525
Score = 64.1 bits (149), Expect = 4e-09
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F + IL +I + R C+AL+LAPTRELA QI G
Sbjct: 105 TGKTAAFVLPILHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVV 164
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IGG R++E GV ++V TPGR+ D
Sbjct: 165 IGGAKPGPQARRMESGVDLLVATPGRLLD 193
Score = 39.9 bits (89), Expect = 0.066
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ + ++ VLDEAD+ML GF I + L Q ++ SATMP +
Sbjct: 200 IRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFSATMPKPI 249
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 64.1 bits (149), Expect = 4e-09
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL-GDHLNAKCHACIGGT 432
TGKT + I+++Q + +I + A+I+ PTRELA Q+Q L + KC A IGGT
Sbjct: 73 TGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGT 132
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+V +D +++ V++GTPGR+
Sbjct: 133 DVAKDRKRMNES-RVIIGTPGRL 154
>UniRef50_Q58HG3 Cluster: DEAD-box RNA helicase; n=4; Eukaryota|Rep:
DEAD-box RNA helicase - Athelges takanoshimensis
Length = 124
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
TGKTA F++ +LQ + + R +AL+L P+RELA QI + V HL+ K
Sbjct: 8 TGKTAGFTLPVLQYLSETKHPKYRPVRALVLTPSRELAAQILENVKEYSTHLDIKSTVVF 67
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG I+ L GV ++V TPGR+ D
Sbjct: 68 GGVKASGQIKTLRQGVDILVATPGRLLD 95
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/87 (40%), Positives = 49/87 (56%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
S+ +GKTA+F+I IL Q+ A+IL PTRELA QI + A+G +N C
Sbjct: 47 SAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVV 106
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRV 501
IGG + L+ H++V TPGR+
Sbjct: 107 IGGIDNVTQALILDKRPHIIVATPGRL 133
>UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=4;
Eukaryota|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 699
Score = 64.1 bits (149), Expect = 4e-09
Identities = 31/61 (50%), Positives = 37/61 (60%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
AL+LAPTRELAQQIQ+V G +NA GG IR LE G +V+ TPGR+
Sbjct: 198 ALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRDLERGAEIVIATPGRLI 257
Query: 505 D 507
D
Sbjct: 258 D 258
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
VLDEAD ML GF+ QI + + D QV++ SAT P +V
Sbjct: 274 VLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSATWPKEV 314
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 64.1 bits (149), Expect = 4e-09
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDT------SIRECQALILAPTRELAQQIQKVVIALGDHLN 402
S+ TGKTA F++ +LQ + T R +ALIL PTRELA QI + V +LN
Sbjct: 44 SAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN 103
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ GG ++ + +L GV V+V TPGR+ D
Sbjct: 104 IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD 138
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ A+ + +++ VLDEAD ML GF I V L A Q +L SAT DD+
Sbjct: 142 QNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194
>UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Lodderomyces elongisporus NRRL
YB-4239|Rep: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5 - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 994
Score = 64.1 bits (149), Expect = 4e-09
Identities = 27/60 (45%), Positives = 41/60 (68%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QI+K ++ ++ K C GG+N+ I +L+ GV+V+V TPGR+ D
Sbjct: 465 LVLSPTRELALQIEKEILKFSSTMDLKVCCCYGGSNIENQISELKRGVNVIVATPGRLID 524
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
VLDEAD M GF+ QI +F + D Q +L SAT P + ++++
Sbjct: 543 VLDEADRMFDMGFEPQIQKIFTQIRPDKQTVLFSATFPRKLEQLAK 588
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/88 (38%), Positives = 51/88 (57%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S +GKTA+F I + + + + QALIL PTRELA Q+++ + +G K A
Sbjct: 46 SQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVF 105
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
G ++ + +L+ H+VVGTPGRV D
Sbjct: 106 GKSSFDKQKAELKQKSHIVVGTPGRVLD 133
Score = 50.0 bits (114), Expect = 6e-05
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I + L + + V+DEADEML+ GF +Q+ + K L + +L SAT+P D+ ++SR
Sbjct: 135 IEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSR 194
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE------CQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKTA + + ++Q + RE +ALILAPTRELAQQ+ + H
Sbjct: 51 TGKTAAYGLPLIQMLSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVT 110
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT++R QL GV +++ TPGR+ D
Sbjct: 111 VYGGTSIRVQQEQLAKGVDILIATPGRLLD 140
Score = 39.5 bits (88), Expect = 0.088
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 659
N +++ VLDEAD ML GF I + K + + Q +L SAT
Sbjct: 150 NQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQTLLFSAT 191
Score = 34.7 bits (76), Expect = 2.5
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2
Query: 164 RLWFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+L F P+ IQQ+AI +QGRDV+A AQ+
Sbjct: 20 QLGFNTPTPIQQQAIPHLLQGRDVLAAAQT 49
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 63.7 bits (148), Expect = 5e-09
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F++ + + T+ R C+ LIL+PTRELA QI + HL +A
Sbjct: 54 TGKTAAFALPSIHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAV 113
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + +R L+ G ++V TPGR+ D
Sbjct: 114 FGGVPIGRQMRMLDRGTDILVATPGRLLD 142
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I +RAL +++FVLDEAD+ML GF + + K+L + Q + SATMP + E+S
Sbjct: 144 IDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLFFSATMPKTIQELS 202
>UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=2; Alteromonadales|Rep: ATP-dependent RNA
helicase, DEAD box family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 399
Score = 63.7 bits (148), Expect = 5e-09
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA FS+ I+ + ID + ++LIL PTRELA QI + + D L K
Sbjct: 50 TGKTAAFSLPIINKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVV 109
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + + +E G+ ++V TPGR+ D
Sbjct: 110 YGGVGRQAQVDSIELGLDILVATPGRLLD 138
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
++ +++FVLDEAD ML GF + + L Q +L SATMP ++
Sbjct: 145 INFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEI 194
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGT 432
+GKT F I L++I+ + QA++L PTRELA+Q+ Q+ A D N K GG
Sbjct: 52 SGKTLCFVIPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQ 111
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ I+ L+ H++VGTPGRV D
Sbjct: 112 PMGPQIQSLKHSPHIIVGTPGRVMD 136
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ +R + +KL VLDEAD ML GF+D + +F VQ +L SAT + + V++
Sbjct: 138 VEKRRIDLRNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFSATFTEQIERVAK 197
>UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila
melanogaster|Rep: GH10652p - Drosophila melanogaster
(Fruit fly)
Length = 818
Score = 63.7 bits (148), Expect = 5e-09
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
AL+LAPTRELAQQIQ+V I G + + + GG + R LE GV +V+ TPGR+
Sbjct: 233 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLI 292
Query: 505 D 507
D
Sbjct: 293 D 293
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
VLDEAD ML GF+ QI + + + D QV++ SAT P +V +++
Sbjct: 309 VLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLA 353
>UniRef50_A7ETZ1 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 670
Score = 63.7 bits (148), Expect = 5e-09
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Frame = +1
Query: 196 ATRNNALHPRTRCYRSSPVRTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQ 363
AT L R C + TGKT F I +Q + R Q L++ PTRELAQQ
Sbjct: 107 ATLRPLLSERVDCLAQAKTGTGKTIAFLIPAIQTLINKQRRPQDGISLLVMTPTRELAQQ 166
Query: 364 IQKVVIALGDHL-NAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
I K L +L N K IGGTN + + + G ++++ TPGR++D
Sbjct: 167 IAKEASQLLKNLPNYKVGFAIGGTNKTTEEKNILNGCNILIATPGRLFD 215
>UniRef50_A6SDG8 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 456
Score = 63.7 bits (148), Expect = 5e-09
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Frame = +1
Query: 196 ATRNNALHPRTRCYRSSPVRTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQ 363
AT L R C + TGKT F I +Q + R Q L++ PTRELAQQ
Sbjct: 110 ATLRPLLSERADCLAQAKTGTGKTIAFLIPAIQTLINKQRRPQDGISLLVMTPTRELAQQ 169
Query: 364 IQKVVIALGDHL-NAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
I K L L N K IGGTN + + + G ++++ TPGR++D
Sbjct: 170 IAKEASQLLQRLPNYKVGFAIGGTNKTTEEKNILKGCNILIATPGRLFD 218
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F++ +L +ID + RE Q LILAPTRELA Q+ L A GG
Sbjct: 71 TGKTAAFALPMLSRIDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGA 130
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ ++ L G ++V TPGR+ D
Sbjct: 131 PMGPQLKALRQGAQILVATPGRLCD 155
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+T+K VLDEADEML GF + + +F L Q +L SAT+P + E++
Sbjct: 165 STVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTVLFSATLPHSIREIA 215
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 63.3 bits (147), Expect = 6e-09
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQ-IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
S+ +GKTA F + IL Q ID +AL++ PTRELA QI + + L H A
Sbjct: 44 SAVTGSGKTAAFLLPILHQLIDRPRGTTRALVITPTRELAAQILEDLNDLAVHTPISAAA 103
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++R GV V++GTPGR+ D
Sbjct: 104 VFGGVSIRPQEHAFRRGVDVLIGTPGRLLD 133
Score = 39.1 bits (87), Expect = 0.12
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
VLDEAD ML GF I + K + A Q + SATMP + ++R
Sbjct: 149 VLDEADRMLDMGFLPDIRRILKHIPARRQTLFFSATMPAPIGVLAR 194
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 63.3 bits (147), Expect = 6e-09
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGT 432
TGKT F + ILQ ++T +++ QA+IL PT ELA QI + V +L I GG+
Sbjct: 49 TGKTVAFIVPILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGS 108
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+++ I L +++VGTPGR+ D
Sbjct: 109 HIQRQIYALRKS-NIIVGTPGRIAD 132
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/59 (49%), Positives = 36/59 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R+ L + IK VLDEADEML GFK + VF+ Q +L SATMP VLE++
Sbjct: 134 INRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLFSATMPKQVLEIA 192
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
TGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G +L +
Sbjct: 49 TGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVF 108
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + I++L GV V+V TPGR+ D
Sbjct: 109 GGVPINPQIQKLRHGVDVLVATPGRLLD 136
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ + + N +++ VLDEAD ML GF I + +L A Q ++ SAT D++ E+++
Sbjct: 138 VQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDEIRELAK 197
Query: 690 CL 695
L
Sbjct: 198 GL 199
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
TGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G +L +
Sbjct: 49 TGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVF 108
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + I++L GV V+V TPGR+ D
Sbjct: 109 GGVPINPQIQKLRHGVDVLVATPGRLLD 136
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL 695
++A+ N +++ VLDEAD ML GF I + ML A Q ++ SAT D++ E+++ L
Sbjct: 140 QKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFSATFSDEIRELAKGL 199
>UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Rep:
SF2-family helicase - Plasmodium falciparum
Length = 490
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/89 (37%), Positives = 51/89 (57%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
SS +GKT + SILQ+++ ++ +LIL PTREL QI + G + +C
Sbjct: 113 SSETGSGKTICYCWSILQELNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILSC 172
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IGG ++ E + + H++VGTPGR+ D
Sbjct: 173 IGGFSLIEQRKSVMTKPHIIVGTPGRISD 201
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 62.9 bits (146), Expect = 8e-09
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGG 429
TGKTA F++ +++++ D + L++ PTRELA Q+ + + + N K A GG
Sbjct: 99 TGKTAAFALPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGG 158
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
T+ R I L+ V VVVGTPGR+ D
Sbjct: 159 TDYRNQIYALKRKVDVVVGTPGRIMD 184
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I + N+I VLDEADEML+ GF + I + L + Q++L SATMP+++ +++
Sbjct: 186 IRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSATMPNEIRNIAK 245
>UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=1; Exiguobacterium sibiricum
255-15|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Exiguobacterium sibiricum 255-15
Length = 391
Score = 62.9 bits (146), Expect = 8e-09
Identities = 32/88 (36%), Positives = 47/88 (53%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+P TGKT + I L+ ID + Q +I APTREL QI +V+ K A I
Sbjct: 41 APTGTGKTLAYVIPALELIDENEPHIQVVITAPTRELVMQIHQVIQLFSQGSGIKSGAFI 100
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++ +L+ ++VGTPGR+ +
Sbjct: 101 GGVELKRQHERLKKKPQIIVGTPGRLVE 128
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I + + + +KL VLDEAD++ G + D Q+ +SAT+P+ E +
Sbjct: 130 IDSKKMKMHKVKLIVLDEADQIYESGMSASATRIANSALRDRQLAFISATLPERTAEWGK 189
Query: 690 CL 695
L
Sbjct: 190 TL 191
>UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein;
n=37; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 427
Score = 62.9 bits (146), Expect = 8e-09
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNA--KC 411
+GKTA F++ +LQ++ + S + + L+L PTRELAQQ+ ++ H N K
Sbjct: 57 SGKTAAFAVPLLQRLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKI 116
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
A GG +V ++ L G V+V TPGR+ D
Sbjct: 117 VAAFGGVSVNLQMQSLRAGADVLVATPGRLLD 148
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/55 (45%), Positives = 34/55 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ AL N + VLDEAD MLS GF D+++ V + L A Q +L SAT P++V
Sbjct: 150 LASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSATFPEEV 204
>UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=2;
Aurantimonadaceae|Rep: Superfamily II DNA and RNA
helicase - Fulvimarina pelagi HTCC2506
Length = 457
Score = 62.9 bits (146), Expect = 8e-09
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F++ +L + T + R +ALIL+PTRELA QI + + L +
Sbjct: 52 TGKTAAFALPLLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVV 111
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG +VR I+ L GV ++V TPGR+ D
Sbjct: 112 FGGVSVRPQIQALARGVDILVATPGRLLD 140
Score = 39.1 bits (87), Expect = 0.12
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+RA+ + +LDEAD ML GF + + D Q ++ SATMP + ++S+
Sbjct: 144 QRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPDDRQSMMFSATMPKPIEDLSK 201
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 62.9 bits (146), Expect = 8e-09
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
TGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G HL+ K
Sbjct: 53 TGKTAGFTLPLLEILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVF 112
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + + L G +++ TPGR+ D
Sbjct: 113 GGVKINPQMMALRRGADILIATPGRMMD 140
Score = 39.1 bits (87), Expect = 0.12
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL 695
++A+ + +++ VLDEAD ML GF I + +L Q +L SAT ++ ++++ L
Sbjct: 144 QKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQNLLFSATFSPEIRQLAKGL 203
>UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 53 - Arabidopsis thaliana (Mouse-ear cress)
Length = 616
Score = 62.9 bits (146), Expect = 8e-09
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKT F I I+ +I R L+LAPTRELA+Q++K L+ C
Sbjct: 152 TGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC-- 209
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT + + +RQL+ GV V VGTPGRV D
Sbjct: 210 LYGGTPIGQQMRQLDYGVDVAVGTPGRVID 239
Score = 43.2 bits (97), Expect = 0.007
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R AL+ + ++ VLDEAD+ML GF + + + + L Q ++ SATMP + +++
Sbjct: 243 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTK 300
>UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA
helicase PRP28; n=2; Saccharomycetaceae|Rep:
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 580
Score = 62.9 bits (146), Expect = 8e-09
Identities = 32/71 (45%), Positives = 40/71 (56%)
Frame = +1
Query: 295 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVH 474
Q +++ + LILAPTRELA QI K GD LN IGG E + + GVH
Sbjct: 230 QQESNFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVH 289
Query: 475 VVVGTPGRVYD 507
+VV TPGR+ D
Sbjct: 290 IVVATPGRLID 300
>UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;
Pezizomycotina|Rep: ATP-dependent RNA helicase dbp-8 -
Neurospora crassa
Length = 626
Score = 62.9 bits (146), Expect = 8e-09
Identities = 36/92 (39%), Positives = 48/92 (52%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C S +GKT F++ ILQQ + +IL PTRELA QI + VIAL K
Sbjct: 235 CIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKA 294
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++R+ L H+V+ TPGR+ D
Sbjct: 295 VLITGGADMRKQAIDLAKRPHLVIATPGRLAD 326
>UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 585
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
TGKT + I ++Q + +TS AL+LAPTRELA QIQK + L +
Sbjct: 224 TGKTFAYLIPLIQFVLKLPKLTEETSASGPYALVLAPTRELALQIQKETLKLATPFGLRV 283
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
CIGG ++ I +L G +VV PGR+ D
Sbjct: 284 CCCIGGEPMQPQIEELSNGAEIVVAAPGRLKD 315
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 62.5 bits (145), Expect = 1e-08
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQI-DTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
TGKTA FSI ILQ++ T R+ +AL+L PTRELA QI + A G + K GG
Sbjct: 49 TGKTAAFSIPILQKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGG 108
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
+ L G+ ++V TPGR+ D
Sbjct: 109 VGQKPQTDALRSGIQILVATPGRLLD 134
Score = 46.4 bits (105), Expect = 8e-04
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I++ + +++ FVLDEAD ML GF I + K+L A Q + SATMP ++
Sbjct: 136 ISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTLFFSATMPPEI 190
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI----QKVVIALGDHLNAKC 411
S TGKT +F + I+Q ++ ++E QA+I+APTRELA QI + +++ D++ K
Sbjct: 46 SQTGTGKTLSFLLPIVQNVNPELQEMQAIIVAPTRELAWQIHEELKSILVKQPDYI--KT 103
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + I +++ +V+GTPGR+ D
Sbjct: 104 SLITGGMDRERQIGRVKVSPQIVIGTPGRILD 135
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/50 (34%), Positives = 34/50 (68%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD 668
+AL + +K +++DEAD+ML GF ++ + + L +Q+++ SAT+P+
Sbjct: 140 QALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQALPEKLQMMVFSATIPE 189
>UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=2; Proteobacteria|Rep: ATP-dependent
RNA helicase, DEAD box family protein - Alteromonas
macleodii 'Deep ecotype'
Length = 441
Score = 62.5 bits (145), Expect = 1e-08
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Frame = +1
Query: 241 SSPVRTGKTATFSIS----ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 408
SS +GKT F + ++ Q S ++ +ALILAPTRELA+Q+ ++ LN
Sbjct: 44 SSKTGSGKTFAFLVPAINRLMAQKALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLT 103
Query: 409 CHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C +GG N + ++ L H++VGT GRV D
Sbjct: 104 CSLIVGGENYNDQVKALRRNPHIIVGTAGRVAD 136
>UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein;
n=10; Alphaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9)
Length = 793
Score = 62.5 bits (145), Expect = 1e-08
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALGDHLN 402
S+ +GKT F I+I QI AL +APTRELA Q+ + + L
Sbjct: 58 SAQTGSGKTVAFGIAIADQILQGADRLLFADTPIALAIAPTRELALQVARELGWLYGEAG 117
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
A C+GG + R + R L+ G H+VVGTPGR+ D
Sbjct: 118 AHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 152
Score = 41.1 bits (92), Expect = 0.029
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I R +L + ++ VLDEADEML GF++ + + + + ++ SAT+P ++
Sbjct: 154 IERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEI 208
>UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein;
n=19; Alteromonadales|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 487
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
TGKTA+F++ +L+Q+ + +AL++ PTRELA Q+ + L K A G
Sbjct: 70 TGKTASFALPVLEQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYG 129
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G N+ + +E GV ++V TPGR++D
Sbjct: 130 GANMNPQRKGVEQGVDILVATPGRLFD 156
Score = 40.7 bits (91), Expect = 0.038
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
L +++ V+DEAD ML GF I V ++++ + Q +L SAT D V ++S
Sbjct: 163 LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQTMLFSATYSDAVKQLS 216
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 62.5 bits (145), Expect = 1e-08
Identities = 34/88 (38%), Positives = 48/88 (54%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S +GKTA + I I+ + +ALIL PTRELA Q+ KV ALG +
Sbjct: 46 SKTGSGKTAAYLIPIINNTAKE-KGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVY 104
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++ + I + G +++VGTPGR D
Sbjct: 105 GGVSINKQIELILRGANIIVGTPGRTLD 132
Score = 52.8 bits (121), Expect = 9e-06
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R L+ + + FVLDEADEML GF + I + +L + Q L SAT+P +++E+++
Sbjct: 134 IDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQSFLFSATIPSEIIELAK 193
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 62.5 bits (145), Expect = 1e-08
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
+GKTA F++ +L QID S + Q L++APTRELA Q+ + + GG
Sbjct: 53 SGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQ 112
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+R L+ G VVVGTPGR+ D
Sbjct: 113 RYDIQLRALKQGAQVVVGTPGRILD 137
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R L+ + ++ VLDEADEML GF D + V L + Q L SATMP+ + +++
Sbjct: 139 IRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITK 198
>UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP8 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 619
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C + +GKT F++ I+++I A++L PTRELA Q+ + + +G L
Sbjct: 192 CIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTT 251
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG ++ + ++LE H++V TPGR+ D
Sbjct: 252 ATIVGGMDMMKQAQELEARPHIIVATPGRLCD 283
Score = 37.1 bits (82), Expect = 0.47
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
++ VLDEAD ML+ F ++ +F + A Q L +AT+ + ++E++
Sbjct: 298 VRTLVLDEADRMLTPSFAPELAYLFSQIPAKRQTCLFTATVSEAIMELA 346
>UniRef50_Q836U7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=2; Enterococcus|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Enterococcus faecalis
(Streptococcus faecalis)
Length = 433
Score = 62.1 bits (144), Expect = 1e-08
Identities = 33/88 (37%), Positives = 49/88 (55%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
SP TGKT + + +L ++ + Q LI+AP++ELA QI +V L K I
Sbjct: 44 SPTGTGKTLAYMLPLLLTVEKG-QGNQLLIIAPSQELAMQIAEVARTWAKPLQLKVQTLI 102
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG NV I +L+ V++GTPGR+ +
Sbjct: 103 GGANVSRQIDKLKKRPEVLIGTPGRILE 130
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F+I IL ++ + ++ +ALI+ PTRELA QI + ++ LG K GG +
Sbjct: 93 TGKTAAFAIPILNTLNRN-KDIEALIITPTRELAMQISEEILKLGRFGRIKTICMYGGQS 151
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
++ LE ++ TPGR+ D
Sbjct: 152 IKRQCDLLEKKPKAMIATPGRLLD 175
Score = 50.0 bits (114), Expect = 6e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
++ VLDE+DEML GF D I ++FK L Q +L SATMP+ +
Sbjct: 188 QIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLLFSATMPEPI 231
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 62.1 bits (144), Expect = 1e-08
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQ----QIDTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKC 411
TGKTA+FS+ I+Q Q +TS + ALIL PTRELA Q+ V A H +
Sbjct: 59 TGKTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRS 118
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG ++ + +L GV +++ TPGR+ D
Sbjct: 119 AVVFGGVDMNPQMAELRRGVEILIATPGRLLD 150
Score = 39.9 bits (89), Expect = 0.066
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ ++ + +++ VLDEAD ML GF + + +L + Q +L SAT ++ +++
Sbjct: 152 VQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLA 210
>UniRef50_Q1LSH5 Cluster: DEAD/DEAH box helicase-like protein
precursor; n=1; Ralstonia metallidurans CH34|Rep:
DEAD/DEAH box helicase-like protein precursor -
Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM
2839)
Length = 227
Score = 62.1 bits (144), Expect = 1e-08
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +1
Query: 211 ALHPRTRCYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIAL 387
AL R ++SP +G+T F++++L +D + QAL+L PTRE Q + Q + +
Sbjct: 50 ALAGRDLIVQASP-GSGRTVAFTVALLHHLDPRRFDVQALVLCPTRERVQHVAQCIRDCV 108
Query: 388 GDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ K A + G +R I L G HVVVGTPGRV D
Sbjct: 109 RAARHVKVVALMHGAAMRPQIDSLIHGAHVVVGTPGRVVD 148
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNA 405
S+ TGKTA F++ ILQ++ Q ALIL PTRELA Q+ + A H+N
Sbjct: 44 SAQTGTGKTAAFALPILQKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNI 103
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYDR*LVVRFMPTPSNFLFL 558
GG + ++L+ G ++V TPGR+ + + + FL L
Sbjct: 104 SVLTIYGGMKMATQAQKLKQGADIIVATPGRLLEHIVACNLSLSNVEFLVL 154
Score = 36.3 bits (80), Expect = 0.82
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
L + ++ VLDEAD ML GF I + + ++ Q +L SAT V +++
Sbjct: 144 LSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNLLFSATFSTAVKKLA 197
>UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=3; Clostridium perfringens|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
Length = 405
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA--CIGG 429
TGKT + + I+++ID S E QA+IL+PT EL QI V+ L L K + +G
Sbjct: 50 TGKTLAYLLPIIEKIDDSKNEMQAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGS 109
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVYD 507
N++ + +L+ H++VGT GR+ +
Sbjct: 110 GNIKRQMEKLKNKPHILVGTTGRILE 135
Score = 39.5 bits (88), Expect = 0.088
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I ++ + NTIK V+DE D++L + V K D Q ++ SATM + LE +
Sbjct: 137 INKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLIFSATMNEKALETA 195
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGT 432
TGKTA F + +L +D R QAL+LAPTRELA Q Q + GG+
Sbjct: 93 TGKTAAFGLPLLAIVDADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGS 152
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
I L+ G VVVGTPGRV D
Sbjct: 153 PYGPQIGALKRGAQVVVGTPGRVID 177
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/60 (38%), Positives = 34/60 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I + AL + +++ VLDEADEML GF + + + D L SATMP + +V+R
Sbjct: 179 IEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALFSATMPAAIEKVAR 238
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 432
+GKTA + + I+ +++T E ++LI+ PTRELA Q KV LG N K IGG+
Sbjct: 61 SGKTAAYLVPIINRLETHSTEGVRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGS 120
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+ + L G ++V TPGR+
Sbjct: 121 KLSDQFDNLSSGPDIIVATPGRL 143
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLE 680
N +++ DEAD M GF +Q+ D+ +ML Q++L SAT+P ++ E
Sbjct: 155 NRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILLFSATLPRNLAE 203
>UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=23;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - Bradyrhizobium japonicum
Length = 530
Score = 61.7 bits (143), Expect = 2e-08
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA+F++ IL + I + + L+L+PTREL+ QI A G H+
Sbjct: 64 TGKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLA 123
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IGG + +R L GV V+V TPGR+ D
Sbjct: 124 IGGVPMGRQVRSLMQGVEVLVATPGRLLD 152
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ L +++ VLDEAD ML GF + I + L Q + SATMP D+ E++
Sbjct: 154 VQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELA 212
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 61.7 bits (143), Expect = 2e-08
Identities = 35/88 (39%), Positives = 46/88 (52%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S +GKTA F+I I + I QAL+L PTRELA Q++ + +G K
Sbjct: 48 SKTGSGKTAAFAIPICESIVWEENLPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVF 107
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + L+ H+VVGTPGRV D
Sbjct: 108 GGFPFDKQALTLKQKSHIVVGTPGRVLD 135
Score = 40.3 bits (90), Expect = 0.050
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 662
L + +K ++DEAD ML GF D + + L ++ ++L SATM
Sbjct: 142 LKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFSATM 187
>UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Rhodobacteraceae|Rep: DEAD/DEAH box helicase domain
protein - Dinoroseobacter shibae DFL 12
Length = 508
Score = 61.7 bits (143), Expect = 2e-08
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F + +L + + R C+ LILAPTREL QI + + A + + K
Sbjct: 119 TGKTAAFGLPLLDALMKAGTKPAPRTCRGLILAPTRELVSQICESLRAFTEGSHLKLQVI 178
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG + I++ E G ++V TPGR+ D
Sbjct: 179 VGGVAIGPQIKRAERGADLIVATPGRLID 207
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R+AL + + VLDEAD+ML GF + + +L A+ Q +L SATMP + E+SR
Sbjct: 209 LDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLFSATMPKQMEELSR 268
>UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila
pseudoobscura|Rep: GA19670-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1007
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKT + ++ LQ S + + L++ PTRELA Q+ + LG+ L + K + +GGT
Sbjct: 73 TGKTLIYVVTALQMCSLSTQHPEVLVILPTRELALQVHDIFRFLGEKLRSFKVSSFMGGT 132
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+V D +L HV +GTPGR+
Sbjct: 133 DVTRDREKLR-NCHVAIGTPGRL 154
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/84 (38%), Positives = 47/84 (55%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F I +++++ + Q+LILAPTRELA Q+ + + + GG
Sbjct: 50 TGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMP 108
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ I+ L+ G +VVGTPGRV D
Sbjct: 109 IERQIKALKKGPQIVVGTPGRVID 132
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF-KMLSADVQVILLSATMP 665
+ RR L + I +LDEADEM++ GF D + + K+ + Q +L SATMP
Sbjct: 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMP 186
>UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=4; Saccharomycetales|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 913
Score = 61.7 bits (143), Expect = 2e-08
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTS--IRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKT +F + +L+ I +R LI+ PTRELA QI K + LN C
Sbjct: 365 SGKTLSFVLPLLRHIQDQPPLRRGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCC 424
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG+++ I +L+ G ++VGTPGR+ D
Sbjct: 425 FGGSSIESQIAELKKGAQIIVGTPGRIID 453
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
R + + VLDEAD M GF+ Q+ VF + D Q +L SAT P
Sbjct: 461 RVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFP 509
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 61.3 bits (142), Expect = 3e-08
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKT F I L+ ID I Q LILAPTRE+A QI +V ++G + + K IGG
Sbjct: 44 TGKTLVFCIISLEMIDIDISSVQVLILAPTREIAVQIAQVFSSVGCEIKDLKVEVFIGGL 103
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
+ D +++ + VG PGR+
Sbjct: 104 AIENDKKKVN-NCQIAVGAPGRI 125
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I + L ++LFVLDEAD+++ F+ I+ +F L QVI SAT P D+
Sbjct: 129 IDKGFLKVENVRLFVLDEADKLMETSFQKDINYIFSKLPLSKQVIASSATYPGDL 183
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 61.3 bits (142), Expect = 3e-08
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F++ +L + + + Q L+LAPTRELA Q+ + ++ + GG
Sbjct: 63 TGKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQ 122
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ + + L+ GVHV+VGTPGRV D
Sbjct: 123 SYGQQLAALKRGVHVIVGTPGRVID 147
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R L + +K VLDEADEML GF + + +V + L A QV L SATMP + +++
Sbjct: 149 LERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATMPPQIRRIAQ 208
>UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA
helicase - Bacillus halodurans
Length = 389
Score = 61.3 bits (142), Expect = 3e-08
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
S TGKT + + +L + + + QALILAPT+ELA QI +V L + I
Sbjct: 46 SQTGTGKTLAYLLPMLTKTEELPEQTQALILAPTQELAMQIVEVAKQLTATTSITVLPLI 105
Query: 424 GGTNVREDIRQL-EXGVHVVVGTPGRVYD 507
GG N++ + +L + HV VGTPGR+ +
Sbjct: 106 GGANIKRQVEKLKKKKPHVAVGTPGRILE 134
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 61.3 bits (142), Expect = 3e-08
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F+I +LQ ++ R+ ++LI+ PTRELA QI + A G H
Sbjct: 130 TGKTAAFAIPVLQLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGRHTGLTSTVI 189
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG N L+ G+ +++ TPGR+ D
Sbjct: 190 FGGVNQNPQTASLQKGIDILIATPGRLLD 218
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
LH I+ FVLDEAD ML GF I + L Q + SATMP ++ ++
Sbjct: 225 LHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKKQSLFFSATMPPEITRLA 278
>UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Opitutaceae bacterium TAV2|Rep: DEAD/DEAH box
helicase domain protein - Opitutaceae bacterium TAV2
Length = 536
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/89 (34%), Positives = 46/89 (51%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
S+ TGKTA F++ IL ++ R + L+L PTRELA Q+++ + +
Sbjct: 176 SAQTGTGKTAAFALPILHKLGAHERRLRCLVLEPTRELALQVEEAFQKYSKYTDLTATVV 235
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + L+ GV VV TPGR+ D
Sbjct: 236 YGGVGYGKQREDLQRGVDVVAATPGRLLD 264
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+++ VLDE D ML GF + + + Q + SAT+P ++ +++
Sbjct: 276 VEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLFFSATLPPELAQLA 324
>UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5;
Clostridium|Rep: DEAD/DEAH box helicase-like -
Clostridium cellulolyticum H10
Length = 437
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI--QKVVIALGDHLNAKCHA 417
S TGKT + + + ++ +E QALIL PT ELA Q+ Q +++ + A
Sbjct: 47 SSTGTGKTLAYLLPLFMKLSAEKKEMQALILVPTHELAIQVVRQIELLSQNSEIKATSTP 106
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
IG N+ I +L+ H++VGTPGR+ +
Sbjct: 107 IIGDVNIMRQIDKLKLKPHIIVGTPGRILE 136
Score = 39.5 bits (88), Expect = 0.088
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLE 680
I +R + A+TIK ++DEAD +L D I + K + Q+++ SAT+ +E
Sbjct: 138 IQKRKISAHTIKTIIIDEADRLLDDYNLDNIKAIIKTTLKERQIVMCSATISKKTVE 194
>UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3;
Eumetazoa|Rep: Vasa-related protein CnVAS1 - Hydra
magnipapillata (Hydra)
Length = 797
Score = 61.3 bits (142), Expect = 3e-08
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQ-------QIDTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNA 405
+GKTA F I +L ++ +S+ E QA L++APTRELA QIQK + +
Sbjct: 401 SGKTAAFLIPVLNTLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSI 460
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
K GG V +RQ++ H++VGTPGR+ D
Sbjct: 461 KPVVIYGGVQVAYHLRQVQQDCHLLVGTPGRLKD 494
Score = 34.7 bits (76), Expect = 2.5
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGF----KDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+R + +K +LDEAD ML GF K I+D D ++ SAT P ++ +
Sbjct: 498 KRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPPKEDRHTLMFSATFPTEIQNL 557
Query: 684 SRCL*EILYAYLY 722
+ E L Y+Y
Sbjct: 558 AA---EFLNNYVY 567
>UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3;
Platyhelminthes|Rep: DEAD box polypeptide 19 protein -
Dugesia japonica (Planarian)
Length = 434
Score = 61.3 bits (142), Expect = 3e-08
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTATF +++L +ID + CQ L +APTREL QI +V I + + N K I G
Sbjct: 98 TGKTATFLLTMLSKIDVNDPFCQCLCMAPTRELVNQIAEVAIIMSKFMNNVKITCAIKG- 156
Query: 433 NVREDIRQLEXGVHVVVGTPG 495
+ DI + + +++GTPG
Sbjct: 157 -LSPDILEGQINSQIIIGTPG 176
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 61.3 bits (142), Expect = 3e-08
Identities = 34/84 (40%), Positives = 46/84 (54%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKT F I+Q+I+ +AL+L PTRELA+Q+Q + H + GG
Sbjct: 50 SGKTLAFGCGIIQKIEKG-NGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVA 108
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ IRQLE VVV TPGR+ D
Sbjct: 109 INPQIRQLER-ADVVVATPGRLLD 131
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R + +++ VLDEAD ML GF D + ++ +D Q ++ SAT+ D+ +S
Sbjct: 133 IERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQTMMFSATVSKDIQYLS 191
>UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2;
Streptomyces|Rep: ATP-dependent RNA helicase -
Streptomyces coelicolor
Length = 740
Score = 60.9 bits (141), Expect = 3e-08
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
+GKT +F + L + T + +A+IL PTRELA Q+ + GD L K G
Sbjct: 109 SGKTLSFGLPTLATLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCG 168
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
GT++ I LE GV V+V TPGR+ D
Sbjct: 169 GTSMGNQIYALERGVDVLVATPGRLRD 195
Score = 39.5 bits (88), Expect = 0.088
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I R A +++ VLDEAD+M GF ++ ++ + A Q +L SATM +++
Sbjct: 197 INRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFSATMENEI 251
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 60.9 bits (141), Expect = 3e-08
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGT 432
TGKT F I I+++I+ I++ Q+LIL PTREL Q+ +++ L + + GG
Sbjct: 51 TGKTFAFGIPIIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGE 110
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ + R LE H+++ TPGR D
Sbjct: 111 SYTKQFRALEAKPHLIIATPGRAID 135
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ R + + +K+ LDEADEML GF++ + + K + + Q +L SAT+P + +++
Sbjct: 137 LERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQTVLFSATLPPFIKKIA 195
>UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1;
Acidobacteria bacterium Ellin345|Rep: DEAD/DEAH box
helicase-like - Acidobacteria bacterium (strain
Ellin345)
Length = 423
Score = 60.9 bits (141), Expect = 3e-08
Identities = 36/85 (42%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 432
TGKT F I L+ + DT Q LIL PTRELA Q+ V L +GGT
Sbjct: 75 TGKTLAFIIPALEMLRDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGT 134
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ R I+ + G VVV TPGR+ D
Sbjct: 135 SERNQIQSIRSGARVVVATPGRLED 159
Score = 41.1 bits (92), Expect = 0.029
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 662
RR + + +++ VLDEAD M+ GF I + + L D Q + SATM
Sbjct: 163 RRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPRDKQTLCFSATM 211
>UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia ATCC
50803|Rep: GLP_397_1016_18 - Giardia lamblia ATCC 50803
Length = 332
Score = 60.9 bits (141), Expect = 3e-08
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKT F++ ILQ++ AL+L PTRELA QI++ + A G+ L + + IGG +
Sbjct: 109 SGKTLCFALPILQELSQDPYGIFALVLTPTRELALQIEQQMNAYGNPLGIQAQSLIGGKD 168
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
E L+ H+++ TPGR+
Sbjct: 169 SVEQSAILDSRPHILIATPGRL 190
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 60.9 bits (141), Expect = 3e-08
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 436 VR--EDIRQLEXGVHVVVGTPGRV 501
++ +D+ + E H+VVGTPGRV
Sbjct: 155 IKIHKDLLKNEC-PHIVVGTPGRV 177
Score = 40.3 bits (90), Expect = 0.050
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L ++ F+LDE D+ML S + + ++FKM D QV++ SAT+ ++ V +
Sbjct: 186 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK 241
>UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD
(Asp-Glu-Ala-Asp) box polypeptide 21a; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a -
Strongylocentrotus purpuratus
Length = 657
Score = 60.5 bits (140), Expect = 4e-08
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISIL---QQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
TGKT +F + ++ QQ S R+ L LAPTRELA+QI + A+G HL+ C
Sbjct: 150 TGKTLSFVLPLVEKWQQFPQKSGRQPIILALAPTRELAKQISEYFEAIGPHLSTTC--IY 207
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT+ + G+ VVVGTPGR+ D
Sbjct: 208 GGTSYWPQESAIRRGLDVVVGTPGRILD 235
>UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 598
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
Frame = +1
Query: 256 TGKTATFSISI----LQQIDTSIREC-QALILAPTRELAQQIQKVVIALGDHL---NAKC 411
+GKT F + I ++Q+ T+ + C AL++APTRELA+QI ++ + L HL
Sbjct: 57 SGKTLAFLLPIFNVLIKQVKTANKNCVYALVIAPTRELAKQIHEIAVQLASHLENNQFSI 116
Query: 412 HACIGGTNVREDIRQLE-XGVHVVVGTPGRV 501
CIGG + + D+ ++ G ++++ TPG++
Sbjct: 117 QLCIGGVSTKIDVSNIQSQGANILIATPGKL 147
>UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: ATP-dependent RNA
helicase - Entamoeba histolytica HM-1:IMSS
Length = 450
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F++ I+ + T AL+L PTRELA QI A G +N + +GG +
Sbjct: 78 SGKTAAFALPIIHHLSTDPYTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVD 137
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
V + L HV++ TPG++
Sbjct: 138 VIRILHHLSGSPHVIIATPGKL 159
>UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10;
Rhizobiales|Rep: ATP-DEPENDENT RNA HELICASE RHLE -
Brucella melitensis
Length = 535
Score = 60.5 bits (140), Expect = 4e-08
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKTA FS+ ILQ+I + +ALILAPTRELA QI++ + + +
Sbjct: 135 SGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALV 194
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG + I+++ G+ V++ TPGR+ D
Sbjct: 195 LGGVSKLSQIKRIAPGIDVLIATPGRLTD 223
Score = 41.1 bits (92), Expect = 0.029
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL 695
VLDEAD ML GF + + + K A+ Q L SATMP ++ ++ L
Sbjct: 239 VLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERL 286
>UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 568
Score = 60.5 bits (140), Expect = 4e-08
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQID--------TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
+GKTA+F I +L I T QALIL PTRELAQQI+ L +C
Sbjct: 315 SGKTASFLIPLLAYISKLPKLDEHTKALGPQALILVPTRELAQQIETETNKFAGRLGLRC 374
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +GG ++ + L G +V+ TPGR+ D
Sbjct: 375 VSIVGGRDMNDQAYALRDGAEIVIATPGRLKD 406
>UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3;
Thermoprotei|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 434
Score = 60.5 bits (140), Expect = 4e-08
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT +SIS+LQ+I Q LI+APTRELA QI + V + + A GG +
Sbjct: 50 TGKTGAYSISMLQEIKEG-GGIQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQS 108
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ + L+ G ++V TPGR+ D
Sbjct: 109 MGVQLDALKRGAEILVATPGRLID 132
Score = 42.3 bits (95), Expect = 0.012
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R ++ + + VLDEAD ML GF D I + + + + L SATMP ++L +S
Sbjct: 134 IKRGSISIDRVTHLVLDEADTMLDMGFIDDIQFILDLTPDEKVMSLFSATMPIEILRLS 192
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 60.5 bits (140), Expect = 4e-08
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F+++ LQ D S Q L+LA TRE+A Q LG + A+ GG+
Sbjct: 86 TGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSP 145
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
+ D LE H+VVGTPGRV
Sbjct: 146 IAADKVALEKKPHIVVGTPGRV 167
Score = 53.2 bits (122), Expect = 7e-06
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS--ADVQVILLSATMPDDVLEVS 686
L + IKLFV+DEADEML GF++Q+ +F+ ++ +VQ+ + SAT ++ L VS
Sbjct: 176 LSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQIAMFSATYDEEELRVS 231
Score = 38.3 bits (85), Expect = 0.20
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FE PS IQ+ AI P I GRD+ AQAQS
Sbjct: 58 FETPSFIQKAAIQPIIDGRDIRAQAQS 84
>UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX49;
n=34; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX49 - Homo sapiens (Human)
Length = 483
Score = 60.5 bits (140), Expect = 4e-08
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C + +GKTA F + ILQ++ L+L PTRELA QI + LG L K
Sbjct: 42 CLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKD 101
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG ++ +L HVV+ TPGR+ D
Sbjct: 102 CIIVGGMDMVAQALELSRKPHVVIATPGRLAD 133
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 60.1 bits (139), Expect = 6e-08
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +1
Query: 208 NALHPRTRCYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL 387
NA+H + ++ TGKTA F +S+L Q+ + L+L TRELA QI+ L
Sbjct: 71 NAIHGKDVLCQAK-AGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRL 129
Query: 388 GDHLNAKCHACIGGTNVREDIRQLE-XGVHVVVGTPGR 498
G N K A GG DI L+ H++V TPGR
Sbjct: 130 GKFTNFKVKAVYGGVEESVDIHTLKTKKPHILVATPGR 167
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 60.1 bits (139), Expect = 6e-08
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKTA F++ IL+++ + R + + L+L PTRELA Q+ + + + L K
Sbjct: 49 TGKTAAFALPILEKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPV 108
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + I+ L+ G+ +VV TPGR+ D
Sbjct: 109 FGGVSSYPQIQALKSGIDIVVATPGRLLD 137
Score = 41.5 bits (93), Expect = 0.022
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+ AL I V DEAD M GF I + KML Q +L SAT P +V+ +
Sbjct: 141 QNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLLFSATYPSEVMSL 196
>UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2;
Ostreococcus|Rep: ATP-dependent RNA helicase -
Ostreococcus tauri
Length = 683
Score = 60.1 bits (139), Expect = 6e-08
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTS--------IRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
TGKT FS+ +++++ ++ R + ++LAPTRELA+Q++ + L+ C
Sbjct: 73 TGKTLAFSLPVIEKLLSNGRGSGGRGYRNPKCIVLAPTRELAKQVENEIFITAPTLDTAC 132
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT + + +L GV +VVGTPGR+ D
Sbjct: 133 --VYGGTPIGQQESKLRRGVDIVVGTPGRIMD 162
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ RRAL + I+ VLDEAD+ML+ GF++ + + A Q L SATMP V ++++
Sbjct: 164 MNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGRQTFLFSATMPQWVKQITK 223
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 60.1 bits (139), Expect = 6e-08
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC-IGGT 432
TGKT FSI +L +ID S + QAL+LAPTRELA QI V +G + A IGG
Sbjct: 141 TGKTGAFSIGVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGA 200
Query: 433 NVREDIR-QLEXGVHVVVGTPGRVYD 507
D + + H+ + TPGR D
Sbjct: 201 QRVVDAQARAASHPHICICTPGRALD 226
Score = 51.2 bits (117), Expect = 3e-05
Identities = 27/90 (30%), Positives = 44/90 (48%)
Frame = +3
Query: 468 CSCXGGHSRSCI**ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 647
C C G + I L K+ VLDEAD+MLS F +Q++D+ + DVQ++L
Sbjct: 217 CICTPGRALDLI---VSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPEDVQILL 273
Query: 648 LSATMPDDVLEVSRCL*EILYAYLYRRKSL 737
SAT+ + + + L +++ L
Sbjct: 274 FSATISQSIFHIMNTFMNDPFRILIKKEQL 303
Score = 36.3 bits (80), Expect = 0.82
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +2
Query: 683 ISMLMRDPVRILVQKEELTLEGIK 754
++ M DP RIL++KE+LTLEGIK
Sbjct: 286 MNTFMNDPFRILIKKEQLTLEGIK 309
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 51 SYDG-PPGMDTGTLDTDWDQVVETFDDMNLKEELLRGIYAYGLK 179
SY+ P D +W V+ FD M+L LL+G+Y+YG +
Sbjct: 69 SYEAMTPAQDDPNFIPNWTTRVDDFDQMDLPPALLQGVYSYGFR 112
>UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1;
Methanospirillum hungatei JF-1|Rep: DEAD/DEAH box
helicase-like - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 531
Score = 60.1 bits (139), Expect = 6e-08
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKTA F I ++ + R Q ++L P+RELA Q+ + L H GG
Sbjct: 52 TGKTAAFGIPAIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQ 111
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ I+ L GV +++GTPGRV D
Sbjct: 112 PIERQIKALSRGVQIIIGTPGRVID 136
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R+ L + + L VLDEAD+ML GF++ I ++ + + Q ++LSAT P ++L++SR
Sbjct: 138 IKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVILSATFPPEILDISR 197
>UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;
n=5; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 789
Score = 60.1 bits (139), Expect = 6e-08
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +1
Query: 211 ALHPRTRCYRSSPVRTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 381
AL R C S+ +GKTA F++ L+++ + + LIL PTRELA QI ++
Sbjct: 201 ALTGRDLC-ASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQ 259
Query: 382 ALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L + KC +GG +VRE L +VV TPGR+ D
Sbjct: 260 NLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Score = 38.7 bits (86), Expect = 0.15
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+ + +LDEAD +L GF +I ++ ++ Q +L SATM ++V E+
Sbjct: 314 LAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKEL 361
>UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED: similar to
R27090_2 - Ornithorhynchus anatinus
Length = 332
Score = 59.7 bits (138), Expect = 8e-08
Identities = 34/92 (36%), Positives = 46/92 (50%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C + +GKTA F + ILQ++ L+L PTRELA QI + LG L K
Sbjct: 42 CMGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKD 101
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG ++ L HVV+ TPGR+ D
Sbjct: 102 CIVVGGMDMVTQALDLSRKPHVVIATPGRLAD 133
>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
SCAF14542, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 366
Score = 59.7 bits (138), Expect = 8e-08
Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +3
Query: 36 SKDQGSYDGPPGMDT-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGLK 179
SKD G GP GM+ G ++++W ++ + FDDMNLKE LLRGIYAYG +
Sbjct: 11 SKDHG---GPDGMEPDGIIESNWTEITDNFDDMNLKESLLRGIYAYGFE 56
Score = 57.6 bits (133), Expect = 3e-07
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 363
TGKTATF+ISILQQ++ +E QAL+LAPTRELAQQ
Sbjct: 83 TGKTATFAISILQQLEIDQKETQALVLAPTRELAQQ 118
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQRAI+PCI+G DVIAQAQS
Sbjct: 55 FEKPSAIQQRAIIPCIKGYDVIAQAQS 81
Score = 41.5 bits (93), Expect = 0.022
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
MRDPVRILV+KEELTLEGIK
Sbjct: 188 MRDPVRILVKKEELTLEGIK 207
Score = 37.5 bits (83), Expect = 0.35
Identities = 16/26 (61%), Positives = 23/26 (88%)
Frame = +3
Query: 612 FKMLSADVQVILLSATMPDDVLEVSR 689
F+ LS ++QV+LLSATMP +VLEV++
Sbjct: 160 FQKLSTNIQVVLLSATMPAEVLEVTK 185
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 59.7 bits (138), Expect = 8e-08
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R ++H + IK+ VLDEADEML GF++ + + K AD Q I+ SATM DDVL + +
Sbjct: 145 RGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIMFSATMTDDVLTLMK 202
Score = 56.8 bits (131), Expect = 5e-07
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
TGKTA F+I ++ ++ + QALIL PTREL Q+ + L + N + GG
Sbjct: 57 TGKTAAFAIPTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQ 116
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ +R L +V+ TPGR+ D
Sbjct: 117 EIERQLRALRKNPQIVIATPGRMMD 141
>UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 473
Score = 59.7 bits (138), Expect = 8e-08
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKT F++S+L + E + LIL P+RE+AQQI KV + L + IGGT
Sbjct: 81 SGKTLAFALSLLTTLQKK-PEARGLILVPSREMAQQIYKVFLELCAEMPVSVCLAIGGTT 139
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ QL+ +++ TPGR+ D
Sbjct: 140 GSKQANQLKKNPRLIIATPGRMND 163
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+++ VLDEAD ML GF Q+ + L Q ++ SA+ +V +++
Sbjct: 175 VEVIVLDEADRMLDMGFAPQLRTIQSTLRGPRQTMMFSASFGSNVESIAQ 224
>UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 393
Score = 59.7 bits (138), Expect = 8e-08
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTS--IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
S +GKTA F + +LQ++ + +ALIL PTRELA Q V LG L+ K
Sbjct: 64 SQTGSGKTAAFVLPMLQKLTEAGPAPGPRALILEPTRELAAQTAAVCRQLGRRLSLKTRV 123
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT+ + ++ + GV ++V T GR+ D
Sbjct: 124 ICGGTSREQQVQSVSDGVDIIVATHGRLLD 153
>UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter
caesariensis|Rep: RNA helicase DbpA - Neptuniibacter
caesariensis
Length = 191
Score = 59.7 bits (138), Expect = 8e-08
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 432
+GKTA F I +L ++ QAL+L PTRELA + + L N K GG
Sbjct: 84 SGKTAAFGIGLLLKLRPRNFATQALVLCPTRELATHVANELRKLARFTENLKILTLCGGQ 143
Query: 433 NVREDIRQLEXGVHVVVGTPGRVYD 507
+ I LE G HVVV TPGR+ D
Sbjct: 144 PIGPQIGSLEHGAHVVVRTPGRIKD 168
>UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase
DbpA; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to ATP-independent RNA helicase DbpA -
Candidatus Kuenenia stuttgartiensis
Length = 407
Score = 59.7 bits (138), Expect = 8e-08
Identities = 28/84 (33%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA +I ++Q++D S+ Q L++ PTREL Q + + + + +A GG +
Sbjct: 49 SGKTAACAIPLIQKVDPSLDAIQGLVIVPTRELCMQYVEEIRKIAAKTDVIPYAVYGGFD 108
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
I +++ VH++V TPGR+ D
Sbjct: 109 RAAQIARVKQTVHILVATPGRLID 132
Score = 54.0 bits (124), Expect = 4e-06
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR-CL*EILYAY 716
IK +LDEADE+L GF + I + + Q +L SATMPDD+ ++++ CL E Y
Sbjct: 144 IKCVILDEADELLKVGFLEDIEFILSCIRHKHQTLLFSATMPDDIKKLTQDCLHEPQYIS 203
Query: 717 LYRRKSLP 740
L ++S P
Sbjct: 204 LVTKRSAP 211
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 59.7 bits (138), Expect = 8e-08
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKTA F I++LQ++ T E +ALILAPTRELA QI K L + +
Sbjct: 146 TGKTAAFLITVLQKLLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKYADLNIVT 205
Query: 418 CIGGTNVREDIRQLEXG-VHVVVGTPGRVYD 507
+GG + + QLE V VVV TPGR+ D
Sbjct: 206 VLGGVDYDKQKEQLENEVVDVVVATPGRLLD 236
>UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1;
Bacillus sp. B14905|Rep: Putative uncharacterized
protein - Bacillus sp. B14905
Length = 382
Score = 59.7 bits (138), Expect = 8e-08
Identities = 30/86 (34%), Positives = 50/86 (58%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
SP +GKT + + +L +++ + ++ Q LI+AP++ELA QI +V+ + I
Sbjct: 41 SPTGSGKTLAYVLPLLNKVNGAKKQTQGLIVAPSQELAMQIVEVIREWTAGTDITVQQLI 100
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRV 501
GG N I +L+ +VVGTPGR+
Sbjct: 101 GGANSARQIEKLKKKPTIVVGTPGRL 126
Score = 33.1 bits (72), Expect = 7.6
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV-LEVSRCL*E 701
L I+ +LDE D++LSR ++ I + + QV+++SAT+ +++ L SR + E
Sbjct: 135 LKLKEIETVILDECDQLLSREYRVVIKSFIEGSAFGRQVVVVSATITEEIELVASRMMFE 194
>UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX23;
n=50; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX23 - Homo sapiens (Human)
Length = 820
Score = 59.7 bits (138), Expect = 8e-08
Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Frame = +1
Query: 256 TGKTATFSISILQQIDT-----SIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAK 408
+GKTA F I +L I T I E A+ILAPTRELAQQI++ I G L +
Sbjct: 439 SGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIR 498
Query: 409 CHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
A IGG + + +L G +V+ TPGR+ D
Sbjct: 499 TVAVIGGISREDQGFRLRMGCEIVIATPGRLID 531
>UniRef50_UPI00005A557C Cluster: PREDICTED: similar to eukaryotic
translation initiation factor 4A, isoform 1; n=1; Canis
lupus familiaris|Rep: PREDICTED: similar to eukaryotic
translation initiation factor 4A, isoform 1 - Canis
familiaris
Length = 430
Score = 59.3 bits (137), Expect = 1e-07
Identities = 32/52 (61%), Positives = 36/52 (69%)
Frame = +1
Query: 220 PRTRCYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 375
P R SP TG TATF+ISILQQID ++ +A LAPTR LAQQIQKV
Sbjct: 177 PCLRYISCSPSGTGNTATFAISILQQIDLDLKATKASGLAPTRVLAQQIQKV 228
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 59.3 bits (137), Expect = 1e-07
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQID--TSIREC-QALILAPTRELAQQIQKVVIALGDHLNAK- 408
S+ +GKTA F I +L ++ TS + +ALIL PTRELAQQ+ V +
Sbjct: 87 SAQTGSGKTAAFVIPVLDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLF 146
Query: 409 CHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C +GG I L+ GV V+V TPGR+ D
Sbjct: 147 CVPLVGGAPYNGQITALKKGVQVIVATPGRLLD 179
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+++++ VLDEAD ML GF D I D+ + D Q I+ SAT V +++
Sbjct: 189 SSLEILVLDEADRMLDMGFADDISDILRAAPIDRQTIMCSATWDGPVGKIA 239
>UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: DEAD/DEAH
box helicase-like - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 432
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Frame = +1
Query: 235 YRSSPVRTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 402
+ ++ TGKTA F + +LQ++ D R + L++APTREL+ QI + + + ++
Sbjct: 42 FATAQTGTGKTAAFGLGMLQRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMG 101
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG ++ + L+ GV +V+ TPGRV +
Sbjct: 102 INIAVLVGGKDLESQQKILKEGVDIVIATPGRVLE 136
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL 695
+ L + +++FVLDEAD ML GF +I + +L Q +L SAT D V ++S+ +
Sbjct: 140 KGLSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQTLLFSATFSDKVRKLSKLI 198
>UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13;
Proteobacteria|Rep: DEAD/DEAH box helicase-like -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 422
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSI----RECQALILAPTRELAQQIQKVVIALGDHL--N 402
S+ +GKTA F++ +LQQ+ + R + LIL PTRELA Q+ + + +L
Sbjct: 48 SAQTGSGKTAAFALPMLQQLANAPTGTPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQR 107
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
K GG ++ + L G +VV TPGR+ D
Sbjct: 108 VKVAVVFGGVSINPQMMNLRGGADIVVATPGRLLD 142
Score = 36.7 bits (81), Expect = 0.62
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ AL + + VLDEAD +L GF +++ + ++L Q + SAT P
Sbjct: 144 LEHNALKISEVSTLVLDEADRLLDLGFGEELGRILELLPPRRQNLFFSATFP 195
>UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Marinomonas|Rep: DEAD/DEAH box helicase domain
protein - Marinomonas sp. MWYL1
Length = 417
Score = 59.3 bits (137), Expect = 1e-07
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 408
++P TGKT F +Q I + S + LILAP+RELA+QI VV L H +
Sbjct: 60 TAPTGTGKTIAFCAPAVQHILDRDEQSTTAPKVLILAPSRELARQIFNVVEQLTKHTRIQ 119
Query: 409 CHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
H IGGT +QL ++V TPGR+ +
Sbjct: 120 SHLIIGGTPYGMQQQQLSEPCDILVATPGRLVE 152
Score = 37.9 bits (84), Expect = 0.27
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 662
L + FV+DEAD ML GF I+ + K L + Q ++ SAT+
Sbjct: 159 LDLTDVSYFVIDEADRMLDMGFVSAINCIAKELPKEHQTLMFSATL 204
>UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 407
Score = 59.3 bits (137), Expect = 1e-07
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL--------GDHLNAKC 411
TGKT TF + L+++D R QAL LAPTRE A Q + + + GD
Sbjct: 85 TGKTMTFVVIALERVDAGRRRTQALALAPTRECAVQTHECFVEMIEKFKDMDGD-ARGGI 143
Query: 412 HAC--IGGTNVREDIRQLEXGVHVVVGTPGR 498
C +GG V+ED +L HVVVGTPGR
Sbjct: 144 ETCLLVGGLPVKEDRARLASQPHVVVGTPGR 174
>UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n=3;
Leishmania|Rep: ATP-dependent RNA helicase, putative -
Leishmania major
Length = 625
Score = 59.3 bits (137), Expect = 1e-07
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F++ ILQ + AL+L P+RELA QI IA G L + +GG
Sbjct: 50 SGKTAAFALPILQTLAADAYGVFALVLTPSRELAYQIIDQFIAFGAPLRVRTMLAVGGVP 109
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
+ L+ H+V TPGR+
Sbjct: 110 TETQVDALKARPHIVAATPGRL 131
>UniRef50_Q389T9 Cluster: ATP-dependent DEAD/H RNA helicase,
putative; n=3; Trypanosoma|Rep: ATP-dependent DEAD/H RNA
helicase, putative - Trypanosoma brucei
Length = 520
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/82 (40%), Positives = 45/82 (54%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F + +LQ + AL+L P+RELA QI +ALG L+ + IGG
Sbjct: 50 SGKTAAFVLPLLQILAEDPYGVFALVLTPSRELAYQILDQFVALGAPLHIRAALAIGGVP 109
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
+ + L HVVV TPGR+
Sbjct: 110 HEQQVSVLHGRPHVVVATPGRL 131
>UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=1;
Aedes aegypti|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 639
Score = 59.3 bits (137), Expect = 1e-07
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKT ++ + L ID R + ALILAPTRELAQQI++V G + K
Sbjct: 135 SGKTLSYLLPALMHIDQQSRLRRGDGPIALILAPTRELAQQIKQVTDDFGRAMKIKNTCL 194
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG R+ L+ GV +V+ TPGR+ D
Sbjct: 195 FGGGAKRQQGDDLKYGVEIVIATPGRLID 223
Score = 43.6 bits (98), Expect = 0.005
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL*EILYAYL 719
VLDEAD ML GF+ QI + + + D Q ++ SAT PD VSR + + L Y+
Sbjct: 239 VLDEADRMLDMGFEPQIRAIIEQIRPDHQTLMWSATWPD---AVSRLVKDYLKDYI 291
>UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_32,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 431
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/86 (38%), Positives = 46/86 (53%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
SS +GKTA FS ILQ + A+IL RELA QI + + G +N +
Sbjct: 50 SSQTGSGKTAAFSFPILQTLSQDPYGIFAIILTANRELAVQIAEQIQIFGASVNLRLALL 109
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGR 498
IGG + + ++ L H++VGTPGR
Sbjct: 110 IGGLSSSKQVKLLGQIPHIIVGTPGR 135
>UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA
helicase 29; n=4; core eudicotyledons|Rep: Putative
DEAD-box ATP-dependent RNA helicase 29 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 845
Score = 59.3 bits (137), Expect = 1e-07
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG + + +GG
Sbjct: 76 SGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGG 135
Query: 430 TNVREDIRQLEXGVHVVVGTPGRV 501
++ + +L G V++ TPGR+
Sbjct: 136 DSMEDQFEELTKGPDVIIATPGRL 159
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 537 TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
T++ V DEAD + GF +Q+H + LS + Q +L SAT+P + E ++
Sbjct: 173 TVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
>UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Filobasidiella neoformans|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1072
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI----DTSIRECQ-ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKT F + +L+ + S E A++++PTRELA QI K LN + C
Sbjct: 451 SGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCC 510
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG+++ EDI ++ G VV+ TPGR+ D
Sbjct: 511 VGGSSISEDIAAMKKGAEVVICTPGRMID 539
Score = 37.1 bits (82), Expect = 0.47
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R + V+DEAD M GF+ Q+ + + Q +L SAT P + ++R
Sbjct: 547 RVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPSAQKVLFSATFPKTMESLAR 603
>UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellular
organisms|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 793
Score = 58.8 bits (136), Expect = 1e-07
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTS---IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
TGKTA+F++ +LQ++ S R ++LIL PTRELA Q+ + G +L IG
Sbjct: 339 TGKTASFTLPMLQKLAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIG 398
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G ++ E L GV V++ TPGR+ D
Sbjct: 399 GESMAEQRDVLNRGVDVLIATPGRLLD 425
Score = 36.3 bits (80), Expect = 0.82
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
V+DEAD ML GF I + +L A Q + SATM ++
Sbjct: 441 VIDEADRMLDMGFIPDIEKIVALLPAHRQTLFFSATMAPEI 481
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,179,782
Number of Sequences: 1657284
Number of extensions: 17293065
Number of successful extensions: 49135
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 45293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48672
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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