Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20303
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 148 1e-36
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 131 9e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 91 1e-19
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 65 9e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 61 1e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 6e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 58 1e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 56 7e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 55 1e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 54 2e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 53 4e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 2e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 47 3e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 47 3e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 47 3e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 6e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 2e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 2e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 40 3e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 40 4e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 37 0.004
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 34 0.019
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 30 0.41
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 28 1.3
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.7
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 28 1.7
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 28 1.7
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 5.0
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 5.0
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 6.7
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 6.7
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 6.7
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 6.7
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 26 6.7
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 6.7
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 25 8.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 8.8
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 8.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 148 bits (358), Expect = 1e-36
Identities = 70/102 (68%), Positives = 88/102 (86%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT
Sbjct: 67 TGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTL 126
Query: 436 VREDIRQLEXGVHVVVGTPGRVYDR*LVVRFMPTPSNFLFLM 561
VR+D+ L+ GVHVVVGTPGRV+D + R +PT + +F++
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHDM-IQRRALPTDAVQMFVL 167
Score = 87.0 bits (206), Expect = 3e-18
Identities = 40/59 (67%), Positives = 50/59 (84%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I RRAL + +++FVLDEADEMLSRGFKDQI+D+F++L QV+LLSATMP DVLEV+
Sbjct: 152 IQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVT 210
Score = 55.2 bits (127), Expect = 1e-08
Identities = 21/36 (58%), Positives = 31/36 (86%)
Frame = +3
Query: 72 MDTGTLDTDWDQVVETFDDMNLKEELLRGIYAYGLK 179
++ ++T++D+V++TFDDMNLK ELLRGIYAYG +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFE 40
Score = 45.6 bits (103), Expect = 8e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FE+PSAIQQRAIMP + RDV+AQAQS
Sbjct: 39 FERPSAIQQRAIMPILGERDVLAQAQS 65
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/20 (85%), Positives = 20/20 (100%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
MRDP+RILV+K+ELTLEGIK
Sbjct: 214 MRDPIRILVKKDELTLEGIK 233
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 131 bits (317), Expect = 9e-32
Identities = 61/84 (72%), Positives = 71/84 (84%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+
Sbjct: 69 TGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTS 128
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
V DI++L+ G HVV GTPGRV D
Sbjct: 129 VGNDIKKLDYGQHVVSGTPGRVTD 152
Score = 71.3 bits (167), Expect = 1e-13
Identities = 29/59 (49%), Positives = 46/59 (77%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I RR L +K+ +LDEADE+L++GFK+QI+D+++ L QV+++SAT+P DVLE++
Sbjct: 154 IRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMT 212
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 MDTGTLDTDWD-QVVETFDDMNLKEELLRGIYAYG 173
M+ L T D V +F++MNLKE+LLRGIYAYG
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYG 40
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+E PSA+Q RAI+ +GRDVIAQAQS
Sbjct: 41 YETPSAVQSRAIIQICKGRDVIAQAQS 67
Score = 32.3 bits (70), Expect = 0.077
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +2
Query: 701 DPVRILVQKEELTLEGIK 754
+PVRILV+++ELTLEG+K
Sbjct: 218 NPVRILVKRDELTLEGLK 235
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 91.5 bits (217), Expect = 1e-19
Identities = 45/84 (53%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I L+++DT + Q LIL PTRELA Q +V LG H+N K GGT
Sbjct: 92 TGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTT 151
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH+VVGTPGRV D
Sbjct: 152 LRDDIIRLNDTVHIVVGTPGRVLD 175
Score = 32.3 bits (70), Expect = 0.077
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 549 FVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
FV+DEAD++LS F I + + Q+ L SAT P
Sbjct: 190 FVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFP 228
Score = 31.9 bits (69), Expect = 0.10
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FE+PS IQ+ +I + GRD++A+A++
Sbjct: 64 FERPSPIQEESIPIALSGRDILARAKN 90
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 65.3 bits (152), Expect = 9e-12
Identities = 37/92 (40%), Positives = 50/92 (54%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C + +GKTA F++ I+++ ALIL PTRELA QI + ALG +LN K
Sbjct: 47 CIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKH 106
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG ++ L HVVV TPGR+ D
Sbjct: 107 ALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQVILLSATMPDDVLEV 683
IK V+DEAD +LS F D + D F +L S D Q +L +AT+ D + ++
Sbjct: 154 IKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G + K
Sbjct: 164 TGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFG 218
Query: 436 VREDI-RQLEXGVHVVVGTPGRVYD 507
+++ + + + +V+GTPG V D
Sbjct: 219 IKDSVPKGAKIDAQIVIGTPGTVMD 243
Score = 45.6 bits (103), Expect = 8e-06
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
RR L A IK+FVLDEAD ML +G DQ + +L + Q++L SAT + V
Sbjct: 247 RRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERV 300
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +3
Query: 111 VETFDDMNLKEELLRGIYA 167
V++F+++ LK ELL+GIY+
Sbjct: 113 VKSFEELELKPELLKGIYS 131
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 6e-10
Identities = 30/84 (35%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG +
Sbjct: 94 SGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMD 153
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ L HV+V TPGR+ D
Sbjct: 154 MVTQAVALSKKPHVLVCTPGRLMD 177
Score = 34.7 bits (76), Expect = 0.014
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+K ++DEAD +L F I + K++ + + +L SATM V ++ R
Sbjct: 190 LKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQR 239
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 164 RLWFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+L F+ P+ IQQ AI + RDVI AQ+
Sbjct: 63 KLGFKTPTPIQQEAIPVVLNKRDVIGLAQT 92
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 58.4 bits (135), Expect = 1e-09
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKC 411
+GKTA F I ++ I + E A++LAPTRELAQQIQ + L +C
Sbjct: 297 SGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRC 356
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +GG E Q+ G H+VV TPGR+ D
Sbjct: 357 VSVVGGHAFEEQSFQMSQGAHIVVATPGRLLD 388
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ RR + V+DEAD ML GF+D ++ + L
Sbjct: 390 LERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSL 427
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 55.6 bits (128), Expect = 7e-09
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKT F I IL+ + + QAL++APTRELA QI + + N + + GG
Sbjct: 170 SGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGG 229
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVY 504
V++ R L HVVV TPGR++
Sbjct: 230 LAVQKQQRLLNKHPHVVVATPGRLW 254
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPD 668
IK VLDEAD +L + +++ + ++L + Q + SAT +
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ E L+L TRELA QI+ +L + + GG N
Sbjct: 100 GKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGIN 159
Query: 436 VREDI---RQLEXGVHVVVGTPGRV 501
+++D+ + H+VV TPGR+
Sbjct: 160 IKQDMEAFKDKSKSPHIVVATPGRL 184
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ + L N++K FVLDE D++L S + I +VF+ QV++ SAT+ +++ +
Sbjct: 188 VREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPIC 247
Query: 687 R 689
+
Sbjct: 248 K 248
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQSELEK 265
FE PS +QQ I I G DV+ QA+S + K
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGMGK 101
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.4 bits (125), Expect = 2e-08
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
+GKTA F + IL+++ + + LIL PTRELA Q V + + CIG
Sbjct: 307 SGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIG 366
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G +++ ++L +V+ TPGR D
Sbjct: 367 GLSLKLQEQELRKRPDIVIATPGRFID 393
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I++ V+DEAD ML GF D+++++ + Q +L SATM D V ++ R
Sbjct: 406 IEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIR 455
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.2 bits (122), Expect = 4e-08
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKTA F I +++ + +++ +ALIL+P RELA Q KVV + + A +GG
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGG 176
Query: 430 TNVREDIRQLEXGVHVVVGTPGR 498
++ E L +VV TPGR
Sbjct: 177 VSLEEQFSLLSGKPDIVVATPGR 199
Score = 39.1 bits (87), Expect = 7e-04
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L ++I+ V DEAD + GF Q+ ++ L Q +L SAT+P +++ ++
Sbjct: 209 LELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAK 263
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+ P+ IQ++ I ++GRDV+ A++
Sbjct: 89 FKAPTPIQRKTIPLLLEGRDVVGMART 115
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.8 bits (116), Expect = 2e-07
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Frame = +1
Query: 256 TGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKVVIALGD----HLN 402
+GKT + + I+Q++ T A+I+APTREL QQI V L + H
Sbjct: 189 SGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWI 248
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C+ IGG + + ++ GV++++GTPGR+ D
Sbjct: 249 VSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLAD 282
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 522 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
AL + ++ VLDE D ++ GF++ + + L + +I ++P
Sbjct: 289 ALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIP 336
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
A+I+ PTRELA QI + LN + GG +++ I L+ G +VV TPGR+
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMI 553
Query: 505 D 507
D
Sbjct: 554 D 554
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
R + + VLDEAD M GF+ Q+ + + D Q +L SAT P
Sbjct: 562 RVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFP 610
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 167 LWFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKQLLSL 280
L +EKP++IQ +AI GRDVI A++ K + L
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFL 473
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F + +++ + TS+ AL+++PTRELA Q + ++ +G + I
Sbjct: 87 SGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLII 146
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRV 501
GG N +E+ +L ++++V TPGR+
Sbjct: 147 GGNNYKEEKERLSR-MNILVCTPGRL 171
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+++ +LDEAD +L GF+ + + L Q +L SAT V +++R
Sbjct: 186 LQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLAR 235
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/60 (41%), Positives = 31/60 (51%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+LAPTRELA QIQ+ G + GG IR L GV + + TPGR+ D
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ VLDEAD ML GF+ QI + + D Q ++ SAT P +V ++R
Sbjct: 270 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLAR 319
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 164 RLWFEKPSAIQQRAIMPCIQGRDVI 238
+L FE P+ IQQ+A + GRD++
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMV 163
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 46.0 bits (104), Expect = 6e-06
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F +I +L + R +I++PTRELA QI V L + + I
Sbjct: 137 SGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVI 196
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG N R + +L GV+++V TPGR+ D
Sbjct: 197 GGANRRAEADKLVKGVNLLVATPGRLLD 224
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVILLSATMPDDVLEVSR 689
++ V+DEAD +L GF+D++ + K+L S + Q +L SAT V +++R
Sbjct: 237 LRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLAR 287
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
LILAPTREL QI + + A GG ++R IRQ++ G ++ TPGR+ D
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 508 R*LVVRFMPTPSNFLFLM 561
L+ R + +N FL+
Sbjct: 319 --LIDRGRISLANIKFLV 334
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK---MLSADV-QVILLSATMPDDVL 677
I R + IK VLDEAD ML GF+ QI + + M S + Q ++ SAT P D+
Sbjct: 320 IDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQ 379
Query: 678 EVSR 689
++R
Sbjct: 380 LLAR 383
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.0 bits (99), Expect = 2e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
+GKT F I LQ ++ + + L+++PTRELA Q + + +L N K G
Sbjct: 213 SGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYG 272
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G E R + V++GTPGR+ D
Sbjct: 273 GAPKSEQARAAK-NASVIIGTPGRLLD 298
Score = 31.9 bits (69), Expect = 0.10
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 522 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-----MLSADVQVILLSATMPDDV 674
++ + + VLDEAD ML GF+ I ++ + Q + SAT P+ V
Sbjct: 304 SIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESV 359
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 40.3 bits (90), Expect = 3e-04
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = +1
Query: 256 TGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+ L +
Sbjct: 62 SGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRF 121
Query: 418 CIGGTNVREDIRQ--LEXGVHVVVGTPGR 498
TN + +++ L +V+ TP R
Sbjct: 122 INVATNSSDTVQRPLLLDLPDIVIATPSR 150
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 498 CI**ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 677
C+ + L + +K V+DEAD MLS G+ + + + + L Q L+SAT+ ++
Sbjct: 151 CVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIA 210
Query: 678 EVSR 689
+ +
Sbjct: 211 SLQK 214
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKP+++Q I ++G+D++AQA++
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQART 60
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.9 bits (89), Expect = 4e-04
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
S+ +GKT ++ I I+Q + ++ + +++ PTREL Q+ K + A
Sbjct: 179 SAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCA 238
Query: 418 CIGGTNVREDIRQL-----EXGVHVVVGTPGRVYD 507
G ++R + QL E + V+V TPGR+ D
Sbjct: 239 WTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVD 273
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLS 626
++ V+DEAD +L + F+D + V +S
Sbjct: 286 LRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAK-CHA 417
+P +GKT + ILQ++ + +A+I+APTREL +QI + L + K
Sbjct: 90 APTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIEL 149
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRV 501
++E +L + +GTP R+
Sbjct: 150 SKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQI-HDVFKMLSADVQVILLSATMPDDVLEVSR 689
++ FV+DEAD + GF +Q H + S+++ L SAT+P V E+++
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAK 240
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 36.7 bits (81), Expect = 0.004
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKT F + + + + + ++IL+PTRELA QI + L +
Sbjct: 87 TGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYA 146
Query: 421 IGG-TNVREDIRQLEXGVHVVVGTPGRVYDR*LVVRFMPTPSNFLFLM 561
IGG + +RE+ ++++ TPGR+ D R + + S F++
Sbjct: 147 IGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFIL 194
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-MLSADVQVILLSATMPDDVLEVSR 689
R L + + F+LDEAD ++ GF + I ++ + + + + + SATMP V V R
Sbjct: 182 RILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFR 239
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.019
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Frame = +1
Query: 256 TGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL----------GDH 396
+GKT + + ++ DT ALI+APTRELA QI V L G
Sbjct: 49 SGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKK 108
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRV 501
L A + GT + E VV+GTPGR+
Sbjct: 109 LVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRL 143
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+++ +LDEAD ++ GF+ + + L + L SATM D V
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTV 199
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.9 bits (64), Expect = 0.41
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -3
Query: 721 YKYAYRISHKHRDTSNTSSGMVAESNMT*TSADNILKTSWIWSLKPLDNISSASSRTKSL 542
+ Y+ I + H +T+ ++ E N I S IW + ++ S S+ + L
Sbjct: 26 FAYSAEIIYFHAETTFLFEKIMKEGNEL-EKYSKIELNSEIWEDEEEEDNSGIVSQNERL 84
Query: 541 MVLA*SARRVIYHIH-DLE 488
M L R +IY +H DLE
Sbjct: 85 MKLVNKQREIIYELHKDLE 103
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 28.3 bits (60), Expect = 1.3
Identities = 29/104 (27%), Positives = 47/104 (45%)
Frame = +3
Query: 90 DTDWDQVVETFDDMNLKEELLRGIYAYGLKNLLQSSNAQ*CLASKDAMLSLKPSQNWKNS 269
DTDWD +V + D++L+ RGI A G + L S + + S K ++N K +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQE----VAPLVSSKKMNENLKAA 669
Query: 270 YFLYIDSTTNRYKHS*MSSFDPGSHKRAGTTNSEGGDSSW*SLE 401
+S T+ H+ GS ++NS D S S++
Sbjct: 670 KNQSSESLTSFKGHTDSEDLPSGSMSNEISSNSTKQDVSSSSMD 713
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 84 TLDTDWDQVVETFDDMNLKEELLRGIYAYGLKNLLQ 191
T D WD E FDD N + +GI+ N ++
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSFGNTIR 316
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 102 DQVVETFDDMNLKEELLRGIYAYGLKNLLQSSNAQ 206
D + E D + + E+ L+G+Y GLK + SS +
Sbjct: 143 DLLSEKNDRLTVHEDKLQGVYVQGLKTIYVSSETE 177
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 235 YRSSPVRTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALG 390
Y S+ ++TG T + I Q IDT I QA ++ + L Q + + A+G
Sbjct: 131 YTSNEIKTGYVITETPKISQNIDTGITIPTQAPLVPQRKNLRQHFRPIGDAVG 183
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 61 DLREWTLGHLTPT 99
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 567 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 677
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -2
Query: 215 KALLRVAGLQKVFQTIGVYASQQFFFEVHVIEGFDNLIPVGVKCPSVHSRRSIVTTLILR 36
K L A L + TI +A Q G + + +H +R + L+++
Sbjct: 130 KTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQ 189
Query: 35 WPIFGILW 12
+PIF I W
Sbjct: 190 FPIFLIWW 197
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 364 IQKVVIALGDHLNAKCHACIGGTNVRED 447
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 399 QVITKSYHHLLNLLCQLSCGSQDQ 328
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 459 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 358
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 363 LLCQLSCGSQDQSLTFTNACI 301
L+C L+CG QD+SL+ ++ +
Sbjct: 290 LVCILACGGQDRSLSIWSSAL 310
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = -1
Query: 306 CIDLL*NRYRESSCFSSSDWA*AITSRPWMQGIIARCWIAEGFS 175
C N Y+ SC ++WA + + G+I C G +
Sbjct: 45 CFTTCINTYKPFSCLKHANWALLLAKKKSDTGLIGYCQSLRGLA 88
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEM 575
R + A+T K+ +LDEAD M
Sbjct: 114 RQIFASTFKMIILDEADAM 132
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +1
Query: 331 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGT 489
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 259 GKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 369
G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 91 GSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 683 ISMLMRDPVRILVQKEELTLEGI 751
+ +++ DP R V+KE+LT G+
Sbjct: 61 VQVVLTDPARNFVEKEDLTALGV 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,917
Number of Sequences: 5004
Number of extensions: 71640
Number of successful extensions: 270
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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