Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20303
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 8e-33
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 105 4e-23
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 77 2e-14
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 77 2e-14
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 71 8e-13
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 67 1e-11
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 7e-11
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 1e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 59 4e-09
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 58 8e-09
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 54 2e-07
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 49 4e-06
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 48 6e-06
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 48 6e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 43 3e-04
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 43 3e-04
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 42 7e-04
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 41 0.001
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 41 0.001
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 38 0.012
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 36 0.047
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 32 0.58
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 31 0.76
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 31 1.0
SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29) 29 5.4
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 29 5.4
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12) 29 5.4
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 28 7.1
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34) 28 7.1
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 9.4
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 140 bits (339), Expect = 1e-33
Identities = 67/90 (74%), Positives = 79/90 (87%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE------CQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKTATF+ISILQ+IDT+ ++ CQAL+LAPTRELAQQIQKVV+ALGD+++ KCHA
Sbjct: 133 TGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMHVKCHA 192
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
CIGGTNVRED +LE GVHVVVGTPGRV+D
Sbjct: 193 CIGGTNVREDRMKLEEGVHVVVGTPGRVFD 222
Score = 86.6 bits (205), Expect = 2e-17
Identities = 43/59 (72%), Positives = 47/59 (79%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R L+ IKLFVLDEADEMLSRGFKDQI+DVF L VQV+LLSATMP DVLEV+
Sbjct: 224 INRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQVVLLSATMPTDVLEVT 282
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3
Query: 81 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGLK 179
G ++WD+VVE+FDDMNLKE LLRGIYAYG +
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFE 84
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
MRD VRILV++EE+TLEGIK
Sbjct: 286 MRDVVRILVKREEVTLEGIK 305
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQ 223
FEKPSAIQQRAI PC Q
Sbjct: 83 FEKPSAIQQRAIRPCCQ 99
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 137 bits (332), Expect = 8e-33
Identities = 61/84 (72%), Positives = 75/84 (89%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATFSIS+LQ IDT +RE QAL+L+PTRELA QIQKVV+ALGD+++ +CHACIGGTN
Sbjct: 45 TGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTN 104
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ EDIR+L+ G H+V GTPGRV+D
Sbjct: 105 IGEDIRKLDYGQHIVSGTPGRVFD 128
Score = 74.1 bits (174), Expect = 1e-13
Identities = 33/59 (55%), Positives = 47/59 (79%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I RR L +IK+ VLDEADEML++GFK+QI+DV++ L QV+LLSAT+P ++LE++
Sbjct: 130 IRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMT 188
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = +2
Query: 137 QRRIVERHIRLWFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+RR+V FEKPSAIQQRAI P ++GRDVIAQAQS
Sbjct: 6 ERRVVTDETE-GFEKPSAIQQRAIKPILKGRDVIAQAQS 43
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 686 SMLMRDPVRILVQKEELTLEGIK 754
S M DP+RILV+++ELTLEGIK
Sbjct: 189 SKFMTDPIRILVKRDELTLEGIK 211
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 105 bits (252), Expect = 4e-23
Identities = 45/65 (69%), Positives = 58/65 (89%)
Frame = +1
Query: 310 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGT 489
+RE QAL+L+PTRELA QIQKVV+ALGD+++ +CHACIGGTN+ EDIR+L+ G H+V GT
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGT 60
Query: 490 PGRVY 504
PGRV+
Sbjct: 61 PGRVF 65
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 77.0 bits (181), Expect = 2e-14
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H+ A+ GGT+
Sbjct: 95 TGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTS 154
Query: 436 VREDIRQL-------EXGVHVVVGTPGRVYD 507
+++DI +L VHV+V TPGRV D
Sbjct: 155 LKDDILRLYNKDIFVHVVVHVIVATPGRVLD 185
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
++ V+DEAD++LS FK + + K L + Q++L SAT P V
Sbjct: 198 QMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATFPISV 241
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+KPS IQ+ +I + GRD++A+A++
Sbjct: 67 FDKPSPIQEESIPVALAGRDILARAKN 93
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 77.0 bits (181), Expect = 2e-14
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H+ A+ GGT+
Sbjct: 95 TGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTS 154
Query: 436 VREDIRQL-------EXGVHVVVGTPGRVYD 507
+++DI +L VHV+V TPGRV D
Sbjct: 155 LKDDILRLYNKDIFVHVVVHVIVATPGRVLD 185
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
++ V+DEAD++LS FK + + K L + Q++L SAT P V
Sbjct: 198 QMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATFPISV 241
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+KPS IQ+ +I + GRD++A+A++
Sbjct: 67 FDKPSPIQEESIPVALAGRDILARAKN 93
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGT 432
TGKT FS+ L+ + T Q +IL PTRE+A Q++ V+ A+G H + C IGG
Sbjct: 61 TGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYDGLACKVFIGGI 120
Query: 433 NVREDIRQLEXGVHVVVGTPGRV 501
++ ED + L+ H+ VGTPGRV
Sbjct: 121 SLEEDKKALK-SCHIAVGTPGRV 142
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD 668
I ++ L ++++F+LDEAD++L F+ QI+ +F L + Q++ SAT P+
Sbjct: 146 IEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQMMAFSATYPE 198
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPS IQ +AI G D+IAQA+S
Sbjct: 33 FEKPSPIQLKAIPLGRCGLDLIAQAKS 59
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 69.3 bits (162), Expect = 3e-12
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +1
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
++ KCHACIGGTNVRED +LE GVHVVVGTPGRV+D
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGVHVVVGTPGRVFD 37
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/84 (39%), Positives = 48/84 (57%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKT F++ ILQ + + + ALIL PTRELA QI + ALG + KC +GG +
Sbjct: 12 SGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGID 71
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ L H+++ TPGR+ D
Sbjct: 72 MMSQALMLAKKPHIIIATPGRLID 95
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 64.9 bits (151), Expect = 7e-11
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISIL-----QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKTA + + +L Q ++ R AL +APTRELA+QI DH K C
Sbjct: 527 SGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKVCVC 586
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG +V QLE G H +VGTPGR+ D
Sbjct: 587 YGGVSVPYQASQLERGCHFLVGTPGRLQD 615
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDV 674
++R ++ +I+ +LDEAD ML GF IH + + + Q ++ SAT PD++
Sbjct: 617 VSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMTAKESRQTLMFSATFPDEI 675
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L PTRELAQQ+Q+V ++G H + GG IR+LE GV + + TPGR+ D
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIATPGRLID 195
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 552 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
VLDEAD ML GF+ QI + + D Q ++ SAT P +V
Sbjct: 211 VLDEADRMLDMGFEPQIRTIIDQIRPDRQTLMWSATWPKEV 251
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/92 (35%), Positives = 48/92 (52%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C + +GKTA F++ ILQ++ A++L PTRELA QI LG + K
Sbjct: 47 CIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLGRPIGLKE 106
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG ++ + L HVV+ TPGR+ D
Sbjct: 107 AVIVGGLDMMKQALSLANKPHVVIATPGRLAD 138
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L+ I+ VLDEAD +L F D + +F + Q +L SAT+ D + E+ +
Sbjct: 146 LNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLFSATLTDTMGELQK 200
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 146 IVERHIRLWFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+V + + + +KP+ IQ + P +QGRD I A++
Sbjct: 18 LVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKT 53
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 58.0 bits (134), Expect = 8e-09
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F ++ LQQ++ + L++ TRELA QI K ++ N K GG N
Sbjct: 96 GKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGIN 155
Query: 436 VREDIRQLEXGV-HVVVGTPGRV 501
+++D + L+ H+VVGTPGR+
Sbjct: 156 IKKDQQTLKTNCPHIVVGTPGRI 178
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 58.0 bits (134), Expect = 8e-09
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F ++ LQQ++ + L++ TRELA QI K ++ N K GG N
Sbjct: 96 GKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGIN 155
Query: 436 VREDIRQLEXGV-HVVVGTPGRV 501
+++D + L+ H+VVGTPGR+
Sbjct: 156 IKKDQQTLKTNCPHIVVGTPGRI 178
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 54.4 bits (125), Expect = 9e-08
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAK 408
+GKTA F + ++ + +S E Q A+ +APTRELA QI +
Sbjct: 759 SGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGTMLR 818
Query: 409 CHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C GG +V +RQL+ G +++VGTPGR+ D
Sbjct: 819 PVVCYGGVSVSHQLRQLQSGCNLLVGTPGRLTD 851
Score = 35.5 bits (78), Expect = 0.047
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML----SADVQVILLSATMPDDVLEVSRCL*EIL 707
++ +LDEAD ML GF+ I + + + ++ Q ++ SAT P+ E+ R + L
Sbjct: 863 LQFLILDEADRMLDMGFEPAIRRIVESMGMPDKSERQTLMFSATFPE---EIQRLAGDFL 919
Query: 708 YAYLY 722
YL+
Sbjct: 920 NDYLF 924
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 53.6 bits (123), Expect = 2e-07
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +1
Query: 220 PRTRCYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 399
P S TGKTA F +++L ++D + Q + L+PT ELA+Q KV A+G H
Sbjct: 141 PPVNMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKHC 200
Query: 400 -NAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ K + + G R + H+++GTPG + D
Sbjct: 201 PHIKINYAVRGNQFP---RGQKCTDHIIIGTPGTLLD 234
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 540 IKLFVLDEADEMLS-RGFKDQIHDVFKMLSADVQVILLSATMPDDVLE 680
+ +FVLDEAD M++ +G +DQ + K L D QV+L SAT +DV++
Sbjct: 247 VSVFVLDEADIMIALQGHQDQSIRIHKSLHKDCQVLLFSATYDEDVMK 294
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFS----ISILQQIDTSIRECQ-ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKTA F + I+ Q + + + LI APTREL QQI G N A
Sbjct: 565 SGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAV 624
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG N E + L+ G +VV TPGR+ D
Sbjct: 625 FGGGNKYEQSKALQEGAEIVVATPGRLID 653
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = +1
Query: 313 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTP 492
R+ A+++ PTRELA QI + N +C GGT + E I +L+ G ++V TP
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCTP 202
Query: 493 GRVYD 507
GR+ D
Sbjct: 203 GRMID 207
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQSELEKQLLSLYR 286
+EKP+ IQ +AI + GRD+IA + + + ++R
Sbjct: 125 YEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHR 162
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHD--------VFKMLSADVQVILLSATMPDDV 674
R + VLDEAD M GF+ QI + + D Q ++ SAT P +
Sbjct: 215 RVTNCQRCTYLVLDEADRMFDMGFEPQITKIRYPKVMRIIDCIRPDRQTVMFSATFPRQM 274
Query: 675 LEVSR 689
++R
Sbjct: 275 EALAR 279
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 49.2 bits (112), Expect = 4e-06
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI-DTSI-----RECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKT +F++ +++++ D + R + L++APTRELA+Q+ L +L C
Sbjct: 121 TGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQVGNEFENLKSNLEVYC-- 178
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + G+ V+VGTPGR+ D
Sbjct: 179 IYGGMPYEPQENAINSGLDVLVGTPGRILD 208
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 TGKTATFSISILQ----QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F I I++ Q TS+ AL+++PTRELA Q +V++ +G+ + I
Sbjct: 98 SGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLII 157
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRV 501
GG +++ + +++ ++VV TPGR+
Sbjct: 158 GGKDLKNEQKRI-MKTNIVVCTPGRL 182
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +3
Query: 537 TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
++++ VLDEAD +L GF ++ + + L ++ Q +L SAT V +++R
Sbjct: 196 SLQILVLDEADRILDMGFAPTLNAIIENLPSERQTLLYSATQTRSVKDLAR 246
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 48.4 bits (110), Expect = 6e-06
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 638
L +IK+ VLDEADEML++GFK+QI+DV++ L Q
Sbjct: 31 LDTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
ALI+APTRELA Q++ ++ + + K A +GG + R L+ +VV TPGR++
Sbjct: 221 ALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLKQRPEIVVATPGRLW 280
Query: 505 D 507
+
Sbjct: 281 E 281
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 510 ITRRALHANTIKLF---VLDEADEMLSRGFKDQIHDVFKML 623
+T + H + I+L V+DEAD M+ +G +++ + +++
Sbjct: 327 VTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISILQ---QIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F + +++ ++ R +I++PTREL+ Q V L H N +
Sbjct: 620 SGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIM 679
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG N + + +L+ GV++++ TPGR+ D
Sbjct: 680 GGVNRKAEAERLQKGVNLLIATPGRLLD 707
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/59 (30%), Positives = 38/59 (64%)
Frame = +3
Query: 513 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
T+ L+ N ++ V+DEAD +L GF++++ + ++L + Q +L SAT +V ++++
Sbjct: 712 TQGFLYKN-LQCLVIDEADRILEIGFEEEMRQIIRILPSKRQTVLFSATQTKNVEDLAK 769
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKTA F I + +++ T + +ALIL+PTRELA Q QK + LG K +GG
Sbjct: 329 SGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELGRFTGLKSSVILGG 388
Query: 430 TNV 438
+V
Sbjct: 389 DSV 391
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ VLDEAD M+ GF++ + +F + Q +L SATMP +
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKI 61
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ VLDEAD M+ GF++ + +F + Q +L SATMP +
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKI 61
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+++ VLDEAD ML GF I V L A Q +L SAT DD+
Sbjct: 4 VEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 48
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 9/69 (13%)
Frame = +1
Query: 256 TGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 408
+GKTA F+I +L I + + + ALILAPTRELAQQI++ ++ G L +
Sbjct: 149 SGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIR 208
Query: 409 CHACIGGTN 435
+ IGG +
Sbjct: 209 TVSVIGGAD 217
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
I+R+A+ + V+DE D ML GF+ Q+ + + LS Q +L SAT+P +
Sbjct: 270 ISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQTMLFSATIPPSI 324
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +1
Query: 310 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGT 489
++ +A I+ P RELA QI K +L H + IGG + LE V ++V T
Sbjct: 453 LKRPRACIVVPARELATQILKTAKSLCHHARFRSVGLIGGRKQKWMRDDLESPVDLLVAT 512
Query: 490 PG 495
PG
Sbjct: 513 PG 514
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 36.7 bits (81), Expect = 0.020
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +3
Query: 534 NTIKLFVLDEADEMLSRGFKDQIH---DVFKMLSADV-QVILLSATMPDDVLEVSR 689
++I+ VLDEAD ML GF+ QI D M + Q ++ SAT P ++ ++R
Sbjct: 998 DSIRFLVLDEADRMLDMGFEPQIRRIVDQDSMPKTGIRQTLMFSATFPKEIQMLAR 1053
Score = 35.1 bits (77), Expect = 0.062
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 409 CHACI--GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C C+ GG ++ +R+L+ H++V TPGR+ D
Sbjct: 954 CRPCVVYGGADIGSQLRELDRNCHLLVATPGRLVD 988
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 35.5 bits (78), Expect = 0.047
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHAC 420
S TGK+ F +L + R +I+ PTRELA Q + +V LGD + +
Sbjct: 204 SETGTGKSLVF---LLPSVQDPGRGYGTIIVVPTRELASQMLYEVSRLLGD--KSIVASF 258
Query: 421 IGGTNVREDIRQLEXGVH---VVVGTPGRVYD 507
+ G ++ + L+ +H +V+GTP R+++
Sbjct: 259 VSGVDLSRQEKLLKDSLHPPRIVIGTPKRLWE 290
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 256 TGKTATFSISILQQI---DTSIRECQALILAPTRELAQQ 363
TGKTA F + IL+++ T + L++ PTRELA Q
Sbjct: 58 TGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
IT + + +K F+LDEAD +L++G D I ++ +
Sbjct: 150 ITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
++R + A + L V+DEA + L Q+ + + +V+ LSAT DD+ V +
Sbjct: 221 LSRGSCAAADVVLLVVDEAHKALGNHSYCQVVREILSYTTNFRVLALSATPGDDIKAVQQ 280
Query: 690 CL*EILYAYLYRR 728
L +L +++ R
Sbjct: 281 VLTNLLISHVELR 293
>SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)
Length = 309
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 145 NC*EAYTPMV*KTFCNPAT--RNNALHPRTRCYRSSPV 252
NC E +TP V C RN L+P CY SSPV
Sbjct: 128 NCPEGFTPDVTGLKCTGILPFRNMLLNPYYDCYGSSPV 165
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSR---GFKDQIHDVFKMLS-ADVQVILLSATMPDDVLE 680
+ + ++ +LDEAD++ GF++QI +++ + D+ L SAT+ + + E
Sbjct: 278 IELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPDIHRGLFSATLSNGIEE 333
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 295 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
Q D++++E IL ELA++IQK++ LN K AC+
Sbjct: 58 QGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACL 100
>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
Length = 769
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 128 HEPQRRIVERHIRLWFEKPSAIQQRAIMPCIQGRDVIAQA-QSELEKQLLSLYRFY 292
HEP RRI E H+ L E + Q+ ++ + + ++A S ++LL FY
Sbjct: 468 HEPSRRIGELHVVLGLEDLGPVSQQQLIAASRAQQTESKAFDSVPHQRLLIKLDFY 523
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 60 GPPGMDTGTLDTDWDQVVETFDDMNLKEELLRGIYAYGL-KNLLQSSNAQ*CLASKDAML 236
GPPG GT D VVE DD K E G G + + Q+ L ++A L
Sbjct: 45 GPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGWLLDGFPRTVAQAEKLDGLLEKRNAQL 104
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 7.1
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 27/111 (24%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNA----- 405
+GKT +S+ + + T ALIL PTREL QQ+ V + D +
Sbjct: 120 SGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPG 179
Query: 406 -----------------KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
K A GG V L G VVV TPGR+ D
Sbjct: 180 PSNQSVIYDTQQFTARYKAVAVCGGVPVSTQTIALREGADVVVATPGRLLD 230
>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
Length = 394
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 3 ARGPEDSKNGPSKDQGSYDGPPGM 74
ARGP ++NG KDQ PGM
Sbjct: 286 ARGPRKTRNGTKKDQEEDQERPGM 309
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 15 EDSKNGPSKDQGSYDGPPGMDTGTLDTDWDQVVETFDDMNLKEE 146
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 15 EDSKNGPSKDQGSYDGPPGMDTGTLDTDWDQVVETFDDMNLKEE 146
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 167 GVYASQQFFFEVHVIEGFDNLIPVGVKC 84
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,491,828
Number of Sequences: 59808
Number of extensions: 578443
Number of successful extensions: 1494
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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