Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20303
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       52   8e-09
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 51.6 bits (118), Expect = 8e-09
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
 Frame = +1

Query: 256 TGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAK 408
           +GKTA F++ I+     + +D  +     E Q +I++PTREL  QI + ++    +   K
Sbjct: 244 SGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILK 303

Query: 409 CHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
                GGT+V     +L  G H++V TPGR+ D
Sbjct: 304 TVVAYGGTSVMHQRGKLSAGCHILVATPGRLLD 336



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +3

Query: 534 NTIKLFVLDEADEMLSRGFKDQI-----HDVFKMLSADVQVILLSATMPDDVLEVSR 689
           ++++  VLDEAD ML  GF   I     H+    L  + Q ++ SAT PD+V  ++R
Sbjct: 346 SSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPL-GERQTLMFSATFPDEVQHLAR 401



 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
           ++KP+ +Q+ A+   + GRD++A AQ+
Sbjct: 216 YKKPTPVQKHALPIIMNGRDLMACAQT 242


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 439 GHWCHQCKHGI*HSS 395
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 537 CWHEAHDELSIIYTTWSAHHXMNTXL 460
           C + AH++LS  ++ W      N+ L
Sbjct: 341 CSYMAHEKLSYAFSVWRMEDDWNSNL 366


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 417 LHWWHQCP 440
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 593 LETSGQHFISFIKNKKFDGVGM 528
           L+    H I+ I +K F GVG+
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGV 141


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 62  TSGNGHWDT*HRLGSSCRNL 121
           + G  HWD+  R  ++ RN+
Sbjct: 264 SGGTNHWDSGRRKSAAQRNV 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,901
Number of Sequences: 438
Number of extensions: 5057
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)