Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20303
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 130 7e-31
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 128 3e-30
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 127 7e-30
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 113 2e-25
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 105 4e-23
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 83 1e-16
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 83 1e-16
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 83 2e-16
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 83 2e-16
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 77 1e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 63 2e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 62 3e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 62 5e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 61 9e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 61 9e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 61 9e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 60 2e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 3e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 57 1e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 57 1e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 56 3e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 56 3e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 55 6e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 54 8e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 54 8e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 54 8e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 54 8e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 54 8e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 54 8e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 54 1e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 54 1e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 53 2e-07
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 53 2e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 52 5e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 52 5e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 51 1e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 51 1e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 51 1e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 50 2e-06
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 48 5e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 7e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 47 1e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 47 1e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 47 2e-05
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 46 2e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 46 3e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 46 3e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 45 6e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 45 6e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 1e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 44 1e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 3e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 6e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 6e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 6e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 0.001
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 41 0.001
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 38 0.005
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.010
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 37 0.013
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.017
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 35 0.051
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.4
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 29 4.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 29 4.4
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 7.7
At1g76010.1 68414.m08825 expressed protein 28 7.7
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 130 bits (315), Expect = 7e-31
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+
Sbjct: 87 TGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS 146
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
VRED R L+ GVHVVVGTPGRV+D
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFD 170
Score = 81.4 bits (192), Expect = 6e-16
Identities = 36/60 (60%), Positives = 50/60 (83%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + SATMP + LE++R
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQR I+P +G DVI QAQS
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQS 85
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3
Query: 93 TDWDQVVETFDDMNLKEELLRGIYAYGLK 179
T +D V E+FD M L+E LLRGIYAYG +
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFE 60
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
M PVRILV+++ELTLEGIK
Sbjct: 234 MSKPVRILVKRDELTLEGIK 253
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 128 bits (310), Expect = 3e-30
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+
Sbjct: 89 TGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTS 148
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
VRED R L+ GVHVVVGTPGRV+D
Sbjct: 149 VREDQRVLQSGVHVVVGTPGRVFD 172
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/60 (61%), Positives = 51/60 (85%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L + VQV + SATMP + LE++R
Sbjct: 174 LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 233
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQR I+P +G DVI QAQS
Sbjct: 61 FEKPSAIQQRGIIPFCKGLDVIQQAQS 87
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 84 TLDTDWDQVVETFDDMNLKEELLRGIYAYGLK 179
T T++D+V ++FD M L+ +LLRGIYAYG +
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFE 62
Score = 34.3 bits (75), Expect = 0.089
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
M PVRILV+++ELTLEGIK
Sbjct: 236 MNKPVRILVKRDELTLEGIK 255
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 127 bits (307), Expect = 7e-30
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+
Sbjct: 87 TGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTS 146
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
VRED R L+ GVHVVVGTPGRV+D
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFD 170
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/60 (58%), Positives = 49/60 (81%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ R++L + IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + SATMP + LE++R
Sbjct: 172 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 93 TDWDQVVETFDDMNLKEELLRGIYAYGLK 179
T +D+V E+FD M L+E LLRGIYAYG +
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFE 60
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQR I+P +G DVI QAQS
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQS 85
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
M PVRILV+++ELTLEGIK
Sbjct: 234 MSKPVRILVKRDELTLEGIK 253
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 113 bits (271), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +
Sbjct: 83 TGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS 142
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
V EDIR+LE GVHVV GTPGRV D
Sbjct: 143 VGEDIRKLEHGVHVVSGTPGRVCD 166
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I RR+L IKL +LDE+DEMLSRGFKDQI+DV++ L D+QV L+SAT+P ++LE++
Sbjct: 168 IKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMT 226
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FEKPSAIQQRA+MP +QGRDVIAQAQS
Sbjct: 55 FEKPSAIQQRAVMPILQGRDVIAQAQS 81
Score = 36.3 bits (80), Expect = 0.022
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 93 TDWDQVVETFDDMNLKEELLRGIYAYGLK 179
TD + + +F+DM +KE++LRG+Y YG +
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFE 56
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2
Query: 686 SMLMRDPVRILVQKEELTLEGIK 754
S M +PV+ILV+++ELTLEGIK
Sbjct: 227 SKFMTEPVKILVKRDELTLEGIK 249
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 105 bits (251), Expect = 4e-23
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG +
Sbjct: 70 TGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKS 129
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ EDI++LE GVH V GTPGRVYD
Sbjct: 130 IGEDIKKLERGVHAVSGTPGRVYD 153
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/59 (54%), Positives = 46/59 (77%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
I R +L +KL VLDE+DEMLS+G KDQI+DV++ L D+QV L+SAT+P ++LE++
Sbjct: 155 IKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMT 213
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/27 (70%), Positives = 25/27 (92%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++KPS IQQRA++P ++GRDVIAQAQS
Sbjct: 42 YKKPSEIQQRALVPILKGRDVIAQAQS 68
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 695 MRDPVRILVQKEELTLEGIK 754
M DPVRILV+ +ELTLEGIK
Sbjct: 217 MTDPVRILVKPDELTLEGIK 236
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 111 VETFDDMNLKEELLRGIYAYGLK 179
+++FDDM + +++LRG+Y YG K
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYK 43
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL + GGT+
Sbjct: 179 TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTS 238
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+++DI +L VH++VGTPGR+ D
Sbjct: 239 LKDDIMRLYQPVHLLVGTPGRILD 262
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 546 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ V+DEAD++LS+ F+ + + L Q+++ SAT P
Sbjct: 276 VLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFP 315
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FE+PS IQ+ +I + GRD++A+A++
Sbjct: 151 FERPSPIQEESIPIALTGRDILARAKN 177
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL + GGT+
Sbjct: 179 TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTS 238
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+++DI +L VH++VGTPGR+ D
Sbjct: 239 LKDDIMRLYQPVHLLVGTPGRILD 262
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 546 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ V+DEAD++LS+ F+ + + L Q+++ SAT P
Sbjct: 276 VLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFP 315
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
FE+PS IQ+ +I + GRD++A+A++
Sbjct: 151 FERPSPIQEESIPIALTGRDILARAKN 177
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F I +L++ID + QA+IL PTRELA Q +V L +LN + GGT+
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH++VGTPGR+ D
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILD 255
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +3
Query: 546 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ V+DEAD++LS F+ + ++ + L + Q ++ SAT P
Sbjct: 269 MLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFP 308
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F I +L++ID + QA+IL PTRELA Q +V L +LN + GGT+
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH++VGTPGR+ D
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILD 255
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +3
Query: 546 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ V+DEAD++LS F+ + ++ + L + Q ++ SAT P
Sbjct: 269 MLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFP 308
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F I L++ID QA+IL PTRELA Q +V L +L + GGT+
Sbjct: 202 TGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTS 261
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH++VGTPGR+ D
Sbjct: 262 LRDDIMRLYQPVHLLVGTPGRILD 285
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 546 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ V+DEAD++LS F+ I ++ + L Q+++ SAT P
Sbjct: 299 MLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFP 338
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.9 bits (146), Expect = 2e-10
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKT F I I+ +I R L+LAPTRELA+Q++K L+ C
Sbjct: 152 TGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC-- 209
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT + + +RQL+ GV V VGTPGRV D
Sbjct: 210 LYGGTPIGQQMRQLDYGVDVAVGTPGRVID 239
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R AL+ + ++ VLDEAD+ML GF + + + + L Q ++ SATMP + +++
Sbjct: 243 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTK 300
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG LN +C +GG +
Sbjct: 106 SGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMD 165
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
+ L H+V+ TPGR+
Sbjct: 166 MLTQTMSLVSRPHIVITTPGRI 187
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
K VLDEAD +L GF+D++ +F+ L Q +L SATM ++
Sbjct: 205 KFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNL 248
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 61.7 bits (143), Expect = 5e-10
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKT F I I+ +I + Q L+LAPTRELA+Q++K L+ C
Sbjct: 164 TGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC-- 221
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT + + +R+L G+ V VGTPGR+ D
Sbjct: 222 LYGGTPIGQQMRELNYGIDVAVGTPGRIID 251
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
R AL+ + ++ VLDEAD+ML GF + + + + L A Q ++ SATMP + +++
Sbjct: 255 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTK 312
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 436 VR--EDIRQLEXGVHVVVGTPGRV 501
++ +D+ + E H+VVGTPGRV
Sbjct: 155 IKIHKDLLKNEC-PHIVVGTPGRV 177
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L ++ F+LDE D+ML S + + ++FKM D QV++ SAT+ ++ V +
Sbjct: 186 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK 241
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 12 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 71
Query: 436 VR--EDIRQLEXGVHVVVGTPGRV 501
++ +D+ + E H+VVGTPGRV
Sbjct: 72 IKIHKDLLKNEC-PHIVVGTPGRV 94
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L ++ F+LDE D+ML S + + ++FKM D QV++ SAT+ ++ V +
Sbjct: 103 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK 158
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 436 VR--EDIRQLEXGVHVVVGTPGRV 501
++ +D+ + E H+VVGTPGRV
Sbjct: 155 IKIHKDLLKNEC-PHIVVGTPGRV 177
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L ++ F+LDE D+ML S + + ++FKM D QV++ SAT+ ++ V +
Sbjct: 186 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK 241
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 60.1 bits (139), Expect = 2e-09
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +1
Query: 211 ALHPRTRCYRSSPVRTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 381
AL R C S+ +GKTA F++ L+++ + + LIL PTRELA QI ++
Sbjct: 201 ALTGRDLC-ASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQ 259
Query: 382 ALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L + KC +GG +VRE L +VV TPGR+ D
Sbjct: 260 NLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+ + +LDEAD +L GF +I ++ ++ Q +L SATM ++V E+
Sbjct: 314 LAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKEL 361
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG + + +GG
Sbjct: 76 SGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGG 135
Query: 430 TNVREDIRQLEXGVHVVVGTPGRV 501
++ + +L G V++ TPGR+
Sbjct: 136 DSMEDQFEELTKGPDVIIATPGRL 159
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 537 TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
T++ V DEAD + GF +Q+H + LS + Q +L SAT+P + E ++
Sbjct: 173 TVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDH 396
S+ +GKTA+F + I+ + T R A++LAPTREL Q++ LG
Sbjct: 153 SADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG 212
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L K +GG + + +++ GV +++GTPGRV D
Sbjct: 213 LPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD 249
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT+ +V +V
Sbjct: 251 LSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGG 309
Query: 690 CL*EILYAYLYRRKSLPWKVLN 755
L + + + P K +N
Sbjct: 310 SLAKEIILVSIGNPNKPNKAVN 331
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDH 396
S+ +GKTA+F + I+ + T R A++LAPTREL Q++ LG
Sbjct: 16 SADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG 75
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L K +GG + + +++ GV +++GTPGRV D
Sbjct: 76 LPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD 112
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT+ +V +V
Sbjct: 114 LSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGG 172
Query: 690 CL*EILYAYLYRRKSLPWKVLN 755
L + + + P K +N
Sbjct: 173 SLAKEIILVSIGNPNKPNKAVN 194
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKC 411
+GKTA F + +L I + E + A+++APTRELAQQI++ + +L +
Sbjct: 361 SGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRV 420
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +GG ++ E ++ G +V+ TPGR+ D
Sbjct: 421 TSIVGGQSIEEQGLKITQGCEIVIATPGRLID 452
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDV 611
+ RR N VLDEAD M+ GF+ Q+ V
Sbjct: 454 LERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGV 487
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDH 396
C + +GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 569 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKP 628
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L +C GG+ V + I +L+ G +VV TPGR+ D
Sbjct: 629 LGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 665
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ V+DEAD M GF+ QI + + + + Q +L SAT P V ++R
Sbjct: 680 VTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLAR 729
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 143 RIVERHIRLWFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKQL 271
+I++ +L +EKP IQ +A+ + GRD I A++ K L
Sbjct: 539 KILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTL 581
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQID------TSIREC----QALILAPTRELAQQIQKVVIALGDHLNA 405
TGKT F I I++++ T+ R + L+LAPTRELA+Q++K + +L+
Sbjct: 150 TGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLST 209
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C GG + L GV VVVGTPGR+ D
Sbjct: 210 VC--VYGGVSYTIQQSALTRGVDVVVGTPGRIID 241
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I R+L ++ VLDEAD+ML+ GF++ + + + L Q +L SATMP V +++R
Sbjct: 243 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLAR 302
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 191 IQQRAIMPCIQGRDVIAQAQSELEKQL 271
IQ+ ++P +QGRD+IA+A++ K L
Sbjct: 128 IQRAVLVPALQGRDIIARAKTGTGKTL 154
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 54.4 bits (125), Expect = 8e-08
Identities = 37/94 (39%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 405
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
K GGT V + IR+LE GV ++V TPGR+ D
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLND 287
Score = 35.1 bits (77), Expect = 0.051
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDVL 677
+ R + ++ LDEAD ML GF+ QI + + + Q +L SAT P
Sbjct: 289 LERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP---R 345
Query: 678 EVSRCL*EILYAYLY 722
E+ R + L Y++
Sbjct: 346 EIQRLASDFLSNYIF 360
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/60 (45%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
LILAPTRELA QIQ + G C GG +++LE G +VV TPGR+ D
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ L VLDEAD ML GF+ QI + + Q ++ +AT P +V +++
Sbjct: 582 VSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIA 630
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
R + I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIA 353
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
R + I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIA 353
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
R + I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIA 353
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 54.4 bits (125), Expect = 8e-08
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 405
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
K GGT + + +R+LE GV ++V TPGR+ D
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLND 300
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDVL 677
+ R + I+ LDEAD ML GF+ QI + + + Q +L SAT P
Sbjct: 302 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFP---R 358
Query: 678 EVSRCL*EILYAYLY 722
E+ R + L Y++
Sbjct: 359 EIQRLAADFLANYIF 373
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 164 RLWFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
R + KP+ +Q+ AI ++GRD++A AQ+
Sbjct: 176 RCKYVKPTPVQRHAIPILLEGRDLMACAQT 205
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHL 399
+GKT F+I ILQ + + + + A +L+PTRELA QI + ALG +
Sbjct: 57 SGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADI 116
Query: 400 NAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +C +GG + + L HV+V TPGR++D
Sbjct: 117 SLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD 152
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 537 TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR-CL 695
++K VLDEAD +L+ F+ ++ + + + + + L SATM V ++ R CL
Sbjct: 164 SLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACL 217
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QIQ + G C GG ++++E GV +VV TPGR+ D
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVS 686
+ + + + VLDEAD ML GF+ QI + + Q ++ +AT P +V +++
Sbjct: 369 KRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIA 424
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDH 396
C + +GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 436 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKA 495
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L C GG+ V + I +L+ G +VV TPGR+ D
Sbjct: 496 LGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 532
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ V+DEAD M GF+ QI + + + D Q +L SAT P V ++R
Sbjct: 547 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLAR 596
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+LAPTRELA QIQ+ G K GG +R L+ GV +V+ TPGR+ D
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ VLDEAD ML GF QI + + D Q + SAT P +V ++S+
Sbjct: 247 VTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSK 296
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT- 432
+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G + +
Sbjct: 142 SGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDST 201
Query: 433 -NVREDIRQLEXGVHVVVGTPG 495
R HVV+GTPG
Sbjct: 202 RGAPAATRGAPVSAHVVIGTPG 223
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/89 (37%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKT + + L + R Q LILAPTRELA QIQ+ G +
Sbjct: 213 SGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCI 272
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG IR L GV +V+ TPGR+ D
Sbjct: 273 YGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ VLDEAD ML GF+ QI + + D Q +L SAT P +V ++R
Sbjct: 313 VTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLAR 362
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/89 (37%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKT + + L + R Q LILAPTRELA QIQ+ G +
Sbjct: 213 SGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCI 272
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG IR L GV +V+ TPGR+ D
Sbjct: 273 YGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+ VLDEAD ML GF+ QI + + D Q +L SAT P +V ++R
Sbjct: 313 VTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLAR 362
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
A+IL+PTRELA QI K GGT + + +R+LE G ++V TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 505 D 507
D
Sbjct: 292 D 292
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDV 674
+ R + I+ LDEAD ML GF+ QI + + + Q +L SAT P +
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQI 352
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
A+IL+PTRELA QI K GGT + + +R+LE G ++V TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 505 D 507
D
Sbjct: 292 D 292
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDV 674
+ R + I+ LDEAD ML GF+ QI + + + Q +L SAT P +
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQI 352
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QI V+ G+ K GG++ I + GV +V+GTPGR+ D
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD 254
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
I L + + VLDEAD ML GF++ + + + Q+++ SAT P DV ++++
Sbjct: 256 IESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQ 315
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +1
Query: 304 TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVV 483
T R + ++L PTREL++Q+ +V ++ H + GG+ +R L + +VV
Sbjct: 185 TKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVV 244
Query: 484 GTPGRV 501
GTPGR+
Sbjct: 245 GTPGRI 250
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Frame = +1
Query: 325 ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIGGTNVREDIRQLEXGVHVVVG 486
AL++ P+RELA+Q +++ V +L + + + CIGG ++R + ++ GVH+VV
Sbjct: 176 ALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVA 235
Query: 487 TPGRVYD 507
TPGR+ D
Sbjct: 236 TPGRLKD 242
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 665
+ ++ + + +L LDEAD ++ GF+D I VF + Q +L SATMP
Sbjct: 244 LAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMP 295
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/65 (40%), Positives = 34/65 (52%)
Frame = +1
Query: 313 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTP 492
R L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTP
Sbjct: 173 RSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTP 232
Query: 493 GRVYD 507
GR+ D
Sbjct: 233 GRIKD 237
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQVILLSATMPDDVLEV 683
I R+ L + ++ VLDEADEML GF + + + + S VQ +L SAT+P V +
Sbjct: 239 IERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNI 298
Query: 684 S 686
S
Sbjct: 299 S 299
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVV------IALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGT 489
LI+ P+RELA+Q +VV + + + CIGG ++R + ++ GVH+VV T
Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
Query: 490 PGRVYD 507
PGR+ D
Sbjct: 286 PGRLKD 291
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 674
+ ++ + + + LDEAD ++ GF+D I +VF + Q +L SATMP +
Sbjct: 293 LAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKI 347
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+++ PTRELA Q + V L H + IGG N R + +++ G ++V+ TPGR+ D
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+K V+DEAD +L F++ ++ + K+L Q L SAT V +++R
Sbjct: 237 LKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLAR 286
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCH 414
+GKT F + ++ I S + +I++PTREL+ QI KV L N
Sbjct: 64 SGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSV 123
Query: 415 ACIGGTNVREDIRQL-EXGVHVVVGTPGRVYD 507
+GG V D+ L E G ++++GTPGR+ D
Sbjct: 124 LLVGGREVEADMNTLEEEGANLLIGTPGRLSD 155
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L +++ +LDEAD +L GF+ Q++ + L + L SAT V ++++
Sbjct: 163 LDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 217
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKTA F + ++ I ++ + +I APTRELA QI + A
Sbjct: 276 SGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAV 335
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + E ++L+ G +VV TPGR+ D
Sbjct: 336 YGGMSKHEQFKELKAGCEIVVATPGRLID 364
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+AL VLDEAD M GF+ Q+ + + D Q +L SATMP V +++R
Sbjct: 369 KALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAR 425
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 173 FEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+EKP+AIQ +A+ + GRDVI A++
Sbjct: 248 YEKPTAIQCQALPIVLSGRDVIGIAKT 274
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCH 414
+GKT F + +++ + S + +I++PTREL+ QI V L N
Sbjct: 64 SGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSV 123
Query: 415 ACIGGTNVREDIRQLEX-GVHVVVGTPGRVYD 507
+GG V+ D++ +E G +V++GTPGR+ D
Sbjct: 124 LLVGGREVKADMKIIEEEGCNVLIGTPGRLSD 155
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L +++ +LDEAD +L GF+ Q++ + L + L SAT + V E+++
Sbjct: 163 LDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAK 217
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL*EILYAYL 719
+KLF++DEAD +L GFK + + L Q +L SAT+P +V VS+ + + ++Y+
Sbjct: 532 LKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYI 591
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLE-XGVHVVVGTPGRV 501
LIL PTRELA QI A L +H IGGT R D ++LE +++ TPGR+
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 502 YD 507
D
Sbjct: 516 LD 517
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+SP +GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A+ + +
Sbjct: 68 NSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGS 127
Query: 418 CIGGTNVREDIRQL 459
+G +++ +I QL
Sbjct: 128 AVGQSSIAGEISQL 141
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL*EILYAYL 719
+KLF++DEAD +L GF+ + + L Q +L SAT+P +V VS+ + + ++Y+
Sbjct: 485 LKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYI 544
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 325 ALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVREDIRQLE-XGVHVVVGTP 492
ALIL PTRELA QI K ++ D + + IGGT + D ++LE +++ TP
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLESEPCQILIATP 465
Query: 493 GRVYD 507
GR+ D
Sbjct: 466 GRLLD 470
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+K+ VLDEAD +L GF+ I + + + Q L SAT+P++V ++
Sbjct: 210 VKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQI 257
Score = 35.5 bits (78), Expect = 0.038
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQKVVIALGDHLNAK 408
TGKT F + ++ + D AL++ PTRELA Q + L H +
Sbjct: 102 TGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIG 161
Query: 409 CHACIGGTNVREDIRQLEXG-VHVVVGTPGRVYD 507
IGGT + + ++++ ++V TPGR+ D
Sbjct: 162 VQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKD 195
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +1
Query: 322 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRV 501
+ALI+ PTRELA Q+ + + +L+ K +GG + R+L+ +VV TPGR+
Sbjct: 281 RALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Query: 502 YD 507
++
Sbjct: 341 WE 342
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ + +++ FVLDEAD M+ RG ++ + +L
Sbjct: 349 KHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+K+ VLDEAD +L GF+ I + + Q L SAT+P++V ++
Sbjct: 538 VKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
Score = 35.9 bits (79), Expect = 0.029
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTS---IRECQ-----ALILAPTRELAQQ-IQKVVIALGDHLNAK 408
TGKT F + ++ + S R+ + L++ PTRELA Q + L H +
Sbjct: 430 TGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIG 489
Query: 409 CHACIGGTNVREDIRQLEXG-VHVVVGTPGRVYD 507
IGGT + + R+++ ++V TPGR+ D
Sbjct: 490 VQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKD 523
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.5 bits (93), Expect = 6e-04
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F ++ +L ++ + R L++ PTRELA Q V L + + I
Sbjct: 202 SGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVI 261
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + + L GV+++V TPGR+ D
Sbjct: 262 GGEKRKTEAEILAKGVNLLVATPGRLLD 289
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+K V+DEAD +L + F++ + + +L Q L SAT V +++R
Sbjct: 302 LKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLAR 351
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 683
+K+ VLDEAD +L GF+ +I + + Q L SAT+ D+V ++
Sbjct: 236 VKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +3
Query: 531 ANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCL 695
+ ++ + VLDEAD +LS G++D + V ++ Q +L+SAT DV ++ + +
Sbjct: 198 SESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLI 252
Score = 35.1 bits (77), Expect = 0.051
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 143 RIVERHIRLWFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKQLLSLYRFYNKSIQA 310
R++ + EKP+ IQQ AI ++G+DV+A+A++ K L L K A
Sbjct: 56 RLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSA 111
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +1
Query: 256 TGKTATFSISILQQIDT--SIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+GKT + + +LQ++ + S+ + + A IL P+REL QQ+ V +L + + A
Sbjct: 94 SGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKA 153
Query: 418 C-IGGTNVREDIRQLEXGV-HVVVGTP 492
+ + D+R G+ ++V TP
Sbjct: 154 VQLTSSMSASDMRNALAGLPEILVSTP 180
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+GKT F + ++ I S + +I++PTREL+ QI KV A+ AKC
Sbjct: 65 SGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-AKCRE 123
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
N E E G ++++GTPGR+ D
Sbjct: 124 VEADMNTLE-----EEGANLLIGTPGRLSD 148
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
L +++ +LDEAD +L GF+ Q++ + L + L SAT V ++++
Sbjct: 156 LDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 ECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTN-VREDIRQLEXGVHVVVGT 489
E QA+I+AP+REL QI ++V LG +GG N +R++ + +VVGT
Sbjct: 191 EIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGT 250
Query: 490 PGRV 501
PGR+
Sbjct: 251 PGRI 254
Score = 35.5 bits (78), Expect = 0.038
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS--------------ADVQVILLSATM 662
LH + + VLDE DE+LS F++ IH + + + A+ Q IL+SAT+
Sbjct: 263 LHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATV 322
Query: 663 PDDVLEVSR 689
P V+ ++
Sbjct: 323 PFSVIRAAK 331
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 689
+++ +LDEAD +L FK Q+ + L Q +L SAT V +++R
Sbjct: 219 LQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLAR 268
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F I IL+++ + +I++PTRELA Q V+ +G I
Sbjct: 119 SGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLI 178
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRV 501
GG + ++ ++++V PGR+
Sbjct: 179 GGREGVDVEKERVHEMNILVCAPGRL 204
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 375
C + +GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 116 CILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALGDHLN 402
++P TGKT + ++ + + AL++ PTREL Q+ + + L +
Sbjct: 73 NAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFH 132
Query: 403 AKCHACI-GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ GG ++ +L G+ +++ TPGR+ D
Sbjct: 133 WIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 36.7 bits (81), Expect = 0.017
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQIQKVVIA 384
C + +GKT + + ++Q++ S C + ++L PT ELA Q+ +
Sbjct: 414 CIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRS 473
Query: 385 LG-DHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGR 498
+ + + GG R + LE GV V++ TPGR
Sbjct: 474 ISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGR 512
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 35.1 bits (77), Expect = 0.051
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILLSATMPDDVLEVS 686
I + + + ++ VLDE+D++ + QI V K S + L SAT+PD V E++
Sbjct: 273 IKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELA 332
Query: 687 RCL 695
R +
Sbjct: 333 RSI 335
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDT-SIRECQALILAPTRELAQQ 363
C+ +P +GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 277 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 429
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 432
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 211 ALHPRTRCYRSSPVRTGKTATFSISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIA 384
+L P YRS+ + A + S +++ +++EC +A+ P+ A Q++ + +
Sbjct: 239 SLSPENPAYRSN-----RAAALAAS--GRLEEAVKECLEAVRCDPSYARAHQRLASLYLR 291
Query: 385 LGDHLNAKCHACIGG 429
LG+ NA+ H C+ G
Sbjct: 292 LGEAENARRHLCVSG 306
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 505 HIHDLECPPXHEHXSPVGEYLHGHWCHQCKHGI*HSSDHQ 386
H H+ EC H+H H H +C H H SDHQ
Sbjct: 606 HKHE-ECNHNHDHE----HQSHSHNHEECNHNHDHHSDHQ 640
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 373 VVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVG 486
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 27 NGPSKDQGSYDGPPGMDTG 83
+GPS+ +G YDGP G G
Sbjct: 299 DGPSQGRGGYDGPQGRGRG 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,784,177
Number of Sequences: 28952
Number of extensions: 388049
Number of successful extensions: 1199
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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