Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20301
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 183 2e-47
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 95 1e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 1e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 81 2e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 55 1e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 51 2e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.015
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.079
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.42
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.56
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.98
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.98
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 29 0.98
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 1.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 2.3
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.0
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 27 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.9
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 183 bits (446), Expect = 2e-47
Identities = 81/95 (85%), Positives = 86/95 (90%)
Frame = +2
Query: 242 GKAPHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 421
G+ H G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95
Query: 422 VAPEEHPVLLTEAPLNPKANREKMTQIMFKHSTRP 526
VAPEEHP LLTEAPLNPK+NREKMTQI+F+ P
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAP 130
Score = 119 bits (287), Expect = 4e-28
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +1
Query: 508 QTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 687
+TFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 125 ETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/38 (92%), Positives = 38/38 (100%)
Frame = +3
Query: 141 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPR
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.1 bits (226), Expect = 1e-20
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = +2
Query: 242 GKAPHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-EL 418
G+ H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L
Sbjct: 40 GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQL 99
Query: 419 RVAPEEHPVLLTEAPLNPKANREKMTQIMFKHSTRPPCTSPSKP 550
PEEHP+LLTE PL N+EK+ + ++ P + +P
Sbjct: 100 NTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 79.8 bits (188), Expect = 4e-16
Identities = 33/60 (55%), Positives = 49/60 (81%)
Frame = +1
Query: 508 QTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 687
+T N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD
Sbjct: 130 ETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRD 189
Score = 48.8 bits (111), Expect = 9e-07
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 159 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGR 248
+ +DNGSG KAGFAGDD P+ +FP+ VGR
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.5 bits (217), Expect = 1e-19
Identities = 36/76 (47%), Positives = 58/76 (76%)
Frame = +2
Query: 284 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 463
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 464 LNPKANREKMTQIMFK 511
+NP ANREKM + MF+
Sbjct: 110 MNPVANREKMCETMFE 125
Score = 79.4 bits (187), Expect = 5e-16
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = +1
Query: 529 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDS 690
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD+
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDA 185
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +3
Query: 147 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRIRA 263
E A +V+DNG+G K G+A D+ PR FPSIVGRP +RA
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +2
Query: 287 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 463
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 464 LNPKANREKMTQIMFK 511
LNP NRE +IMF+
Sbjct: 133 LNPPENRENTAEIMFE 148
Score = 62.1 bits (144), Expect = 9e-11
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 8/68 (11%)
Frame = +1
Query: 508 QTFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAIL 663
++FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I
Sbjct: 148 ESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIK 207
Query: 664 RLDLAGRD 687
+ LAGRD
Sbjct: 208 TMPLAGRD 215
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 159 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 242
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +2
Query: 329 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 508
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 509 KHSTRPPCTSPSK 547
+ S R P T +K
Sbjct: 123 E-SLRCPATYLAK 134
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 144 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 245
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 34.7 bits (76), Expect = 0.015
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 508 QTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 648
++ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 275 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 451
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 452 TEAPLNPKANREKMTQIMFKHSTRP 526
TE NP R MT+++F+ P
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAP 145
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 159 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRIR 260
LV+DNGS +AG+ G+ P+ VF ++V R R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR 60
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 508 QTFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 681
+ +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 140 ELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
Query: 682 RDSQT 696
S +
Sbjct: 200 SQSSS 204
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +2
Query: 254 HQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 427
+ GV + ++ YV DE Q I + +K +GI+ +W+ W +L+V
Sbjct: 39 YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVN 98
Query: 428 PEEHPVLLTEAPLNPKANREKMTQIMFK 511
P E+ +++TE NP++ R+++ + F+
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFE 126
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 469 PQGQQREDDPDHVQTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 648
PQ +++ + + PA Y+ QAV +A+ ++T +++D G + P+ +G +
Sbjct: 113 PQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLII 172
Query: 649 PHAILRLDLAG 681
I + LAG
Sbjct: 173 RKGIFKQSLAG 183
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 144 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 245
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 523 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 684
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR
Sbjct: 176 PGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229
Score = 31.5 bits (68), Expect = 0.14
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +2
Query: 344 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFK 511
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ F+
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 512 HSTRPPCTSPSKP 550
P T +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.079
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 527 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 661
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 524 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 661
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 524 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 661
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 524 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 661
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.42
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Frame = +2
Query: 386 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN-REKMTQIMFKHSTRPPCTSPS---KPC 553
K+ +H E EEH + P N K + Q M P C S PC
Sbjct: 569 KLRYHLLTEEFE---EEH---ICFRPCNKKLSCGNHFCQHMCHRGPCPRCLEASFEELPC 622
Query: 554 SRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 652
+ + PPV+C TP P C K H P
Sbjct: 623 TCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.56
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 515 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 661
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 175 STSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 515 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 661
ST P T S S P VPP S T + PT ST +P P+
Sbjct: 118 STSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 515 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 661
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 28.7 bits (61), Expect = 0.98
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 404 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFKHSTRP 526
+Y L E+HP+LLT+ A L P+ + ++ +I K P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.98
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -2
Query: 376 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLLSHTDHHALMRGLPTIEGNTARGASSPAK 197
+P + +V +TSFAL S L A + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 196 PALHIP 179
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 28.7 bits (61), Expect = 0.98
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +2
Query: 407 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFKHSTRPPCTSPSKPCSRCTRPVVPPV 586
Y+EL +A +E P L P PK K+ ++ S KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKV-ASKLKGVV-AGGKENNIASFQKPSSKATRPYIPSY 78
Query: 587 SCWTPATVSPTPCP 628
+ T +V P P P
Sbjct: 79 TRLT-YSVPPLPIP 91
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 586 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 684
+V+DSG +H +P+ + A+ R+D+ G+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGK 191
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 311 VPHLLHKSPSVPYRPSRPDAGPS 243
+ L+ K+PS PY SRP A S
Sbjct: 306 IDQLISKAPSYPYSSSRPSASAS 328
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 548 PCSRCTRPVVPPVSCWTPATVSPTPCPST 634
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 524 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 631
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 463 PQPQGQQREDDPDHVQTFNTPAMYVAIQAVL 555
P +G PD+V+ F+ PA+YV ++ L
Sbjct: 32 PTSRGTVPHLTPDNVEEFDIPALYVGLEDCL 62
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 5.2
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 383 EKIWHHTFYNELRVAPEEHPVLLTE-APLNPKANREKMTQIMFKHSTRPPCTSPSKPCSR 559
E+I T E P H + T AP+ PK ++ + I+ T P TS + P +
Sbjct: 784 EEIQRLTMLLEPHAVPPIHQIKQTGYAPVQPKTSQA--SSIL---PTVPRTTSYTSPYAT 838
Query: 560 CTRPVVPPVSCWTPATVSPTPCPSTKDT 643
+ + TPA V P P PST T
Sbjct: 839 TSSHI-------TPADVHPLPPPSTSTT 859
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Frame = +2
Query: 446 LLTEAPLNPKANREKMTQIMFKHSTRPPCTSPSKPCSRCTRPVVPPVSCWT---PATVSP 616
+L + P+ A + F ++ + S+ S T P PP + T PA SP
Sbjct: 867 MLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASP 926
Query: 617 TPCPSTKDTHSPTPSCVWT*PV 682
P + H PT S PV
Sbjct: 927 PPPKVGETYHPPTASGTRVPPV 948
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 340 FEGQDTSFALCLISYIRVLLSHTDHHA 260
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 428 PEEHPVLLTEAPLNPKANREKMTQIMFKHSTRPPCTSPSKP--CSRCTRPVVPPVSCWTP 601
P++ P++ ++ PL+ + + ++ +T P+KP + T+P PP T
Sbjct: 51 PQDIPLVNSDVPLSTLVSSGQQILVLKNAATSFSTNEPAKPPIPNAATKPTFPP---QTE 107
Query: 602 ATVSPTPCPSTKDTHSPTP 658
+ P +K+T P
Sbjct: 108 ISNPPAVSHQSKNTSQDPP 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,489
Number of Sequences: 5004
Number of extensions: 76409
Number of successful extensions: 280
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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