Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20301
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.59 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.78 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.78 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 281 VPY-RPSRPDAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNF 147
           VPY R  RPD    ++     + ++I+    ++HTG +V+   G F
Sbjct: 82  VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIF 127


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 650 PTPSCVWT*PVATHRLTHEDLTERGYS 730
           PTP+ VW     +    +E+L ER Y+
Sbjct: 737 PTPTIVWKKATGSKSGEYEELRERAYT 763


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 650 PTPSCVWT*PVATHRLTHEDLTERGYS 730
           PTP+ VW     +    +E+L ER Y+
Sbjct: 733 PTPTIVWKKATGSKSGEYEELRERAYT 759


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 287 PSVPYRPSRPDAGPSHDRGEHGARSIISCETGLA 186
           P+      +P+   + D GEH   ++   E GLA
Sbjct: 109 PTKSILEKKPELVDATDPGEHNGDTVTDVEAGLA 142


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 416  LRVAPEEHPVLLTEAPLNPKANREKM 493
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 558 AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHP 662
           ++  +++HR        C P   +L +I + P HP
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 618 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 526
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 180 GMCKAGFAGD 209
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,087
Number of Sequences: 438
Number of extensions: 5697
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)